In this short report, the authors note how annotation of plant genomes is still a challenging task due to the abundance of repetitive sequences, especially long terminal repeat (LTR) retrotransposons. Even programs like LTR_FINDER, which are widely used for the identification of LTR retrotransposons, can have their application on large genomes hindered by single-threaded processes. Here, the authors report an accessory program that allows parallel operation of LTR_FINDER.
Call for Papers: Endogenous Retroviruses in Evolution and Disease
Repository for all published Review articles. Contributions from some of the leading researchers working with mobile DNA.
Mobile DNA Tools
Repository for all published articles on softwares, databases, and methodologies.
Endogenous Retroviruses in Evolution and Disease
Cross-journal series with Retrovirology. Edited by the Editors-in-Chief of Mobile DNA and Retrovirology.
Transposable Elements in Model Organisms (coming soon)
Edited by the Editors-in-Chief
Keystone Symposium: Mobile Genetic Elements and Genome Evolution
Edited by: Henry Levin, Parmit Singh
Mobile genetic elements in biotechnology
Edited by: Henry Levin, Thomas Eickbush, Marlene Belfort, Nancy Craig, Cedric Feschotte
Mobile introns review series
Edited by: Thomas Eickbush, Marlene Belfort, Nancy Craig, Daniel Voytas
The Editors-in-Chief of Mobile DNA welcome authors to send any pre-submission inquiries they might have to the Editorial Email address, which can be found here by clicking on "Contact Us" (upper left side of page). We ask that you please include “Pre-submission inquiry” in the subject line of your email and that you include the title and abstract of your proposed submission within the message. Our Editors will do their best to respond to you in a timely manner.
Highlights from recent literature on mobile elements, selected by the Editors-in-Chief.
LINE-1 ORF2p expression is nearly imperceptible in human cancers [Mob DNA 2019] PubMed
A benchmark of transposon insertion detection tools using real data [Mob DNA 2019] PubMed
Tools and best practices for retrotransposon analysis using high-throughput sequencing data [Mob DNA 2019] PubMed
A re-evaluation of LINE-1 ORF2 expression in LNCaP prostate cancer cells [Mob DNA 2019] PubMed
Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins [Nat Neurosci 2020] PubMed
Irina Arkhipova, Marine Biological Laboratory at Woods Hole
Cédric Feschotte, Cornell University
Haig Kazazian, Johns Hopkins University
Henry Levin, NIH
In 2019, we welcomed our new Associate Editors:
Orsolya Barabas, European Molecular Biology Laboratory (EMBL), Germany
Gael Cristofari, Institut National de la Santé et de la Recherche Médicale, France
Adam Ewing, Mater Research Institute-University of Queensland, Australia
Clément Gilbert, CNRS, Université Paris Saclay, France
Molly G Hammell, Cold Spring Harbor Laboratory, USA
Damon R Lisch, Purdue University, USA
Joe Peters, Cornell University, USA
Phoebe Rice, The University of Chicago, USA
Aims and scope
Mobile DNA is an open access, peer-reviewed journal that publishes articles providing novel insights into DNA rearrangements in all organisms, ranging from transposition and other types of recombination mechanisms to patterns and processes of mobile element and host genome evolution. In addition, the journal will consider articles on the utility of mobile genetic elements in biotechnological methods and protocols.
Updated monthly, check out the newest published research on transposable elements in the TE Digest on Alexander Suh of Uppsala University's Genomicrocosm page here.
3rd International Workshop on Human Endogenous Retroviruses & Diseases - November 5-6, 2019 - Lyon, France
4th International Congress on Transposable Elements - April 25-28, 2020 - Saint Malo, France
Annual Journal Metrics
37 days to first decision for reviewed manuscripts only
34 days to first decision for all manuscripts
88 days from submission to acceptance
12 days from acceptance to publication
3.630 - 2-year Impact Factor
4.405 - 5-year Impact Factor
1.206 - Source Normalized Impact per Paper (SNIP)
4.407 - SCImago Journal Rank (SJR)
704 Altmetric Mentions