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  3. In the course of analyzing whole-genome data, it is common practice to mask or filter out repetitive regions of a genome, such as transposable elements and endogenous retroviruses, in order to focus only on ge...

    Authors: R. Keith Slotkin
    Citation: Mobile DNA 2018 9:15
    Content type: Commentary Published on:

  5. Since the completion of the human genome project, the diversity of genome sequencing data produced for non-human primates has increased exponentially. Papio baboons are well-established biological models for stud...

    Authors: Vallmer E. Jordan, Jerilyn A. Walker, Thomas O. Beckstrom, Cody J. Steely, Cullen L. McDaniel, Corey P. St. Romain, Kim C. Worley, Jane Phillips-Conroy, Clifford J. Jolly, Jeffrey Rogers, Miriam K. Konkel and Mark A. Batzer
    Citation: Mobile DNA 2018 9:13
    Content type: Research Published on:

  6. LINE-1 (L1) is the dominant autonomously replicating non-LTR retrotransposon in mammals. Although our knowledge of L1 evolution across the tree of life has considerably improved in recent years, what we know o...

    Authors: Akash Sookdeo, Crystal M. Hepp and Stéphane Boissinot
    Citation: Mobile DNA 2018 9:12
    Content type: Research Published on:

  7. The restriction factor SAMHD1 regulates intracellular nucleotide level by degrading dNTPs and blocks the replication of retroviruses and DNA viruses in non-cycling cells, like macrophages or dendritic cells. I...

    Authors: Alexandra Herrmann, Sabine Wittmann, Dominique Thomas, Caitlin N. Shepard, Baek Kim, Nerea Ferreirós and Thomas Gramberg
    Citation: Mobile DNA 2018 9:11
    Content type: Research Published on:

    The Correction to this article has been published in Mobile DNA 2018 9:16

  8. Alu elements are primate-specific retroposons that mobilize using the enzymatic machinery of L1 s. The recently completed baboon genome project found that the mobilization rate of Alu elements is higher than in t...

    Authors: Cody J. Steely, Jasmine N. Baker, Jerilyn A. Walker, Charles D. Loupe III and Mark A. Batzer
    Citation: Mobile DNA 2018 9:10
    Content type: Research Published on:

  9. The evolution of Alu elements has been ongoing in primate lineages and Alu insertion polymorphisms are widely used in phylogenetic and population genetics studies. Alu subfamilies in the squirrel monkey (Saimiri)...

    Authors: Jasmine N. Baker, Jerilyn A. Walker, Michael W. Denham, Charles D. Loupe III and Mark A. Batzer
    Citation: Mobile DNA 2018 9:9
    Content type: Research Published on:

  11. P-element transposition in the genome causes P-M hybrid dysgenesis in Drosophila melanogaster. Maternally deposited piRNAs suppress P-element transposition in the progeny, linking them to P-M phenotypes; however,...

    Authors: Keiko Tsuji Wakisaka, Kenji Ichiyanagi, Seiko Ohno and Masanobu Itoh
    Citation: Mobile DNA 2018 9:7
    Content type: Research Published on:

  13. The genome of the gastric pathogen Helicobacter pylori is characterised by considerable variation of both gene sequence and content, much of which is contained within three large genomic islands comprising the ca...

    Authors: Robin M. Delahay, Nicola J. Croxall and Amberley D. Stephens
    Citation: Mobile DNA 2018 9:5
    Content type: Research Published on:

  14. Inteins are mobile, self-splicing sequences that interrupt proteins and occur across all three domains of life. Scrutiny of the intein landscape in prokaryotes led to the hypothesis that some inteins are funct...

    Authors: Cathleen M. Green, Olga Novikova and Marlene Belfort
    Citation: Mobile DNA 2018 9:4
    Content type: Research Published on:

  17. Long Interspersed Nuclear Element-1 (LINE-1) is an autonomous retrotransposon that generates new genomic insertions through the retrotransposition of a RNA intermediate. Expression of LINE-1 is tightly repress...

    Authors: Erica M. Briggs, Susan Ha, Paolo Mita, Gregory Brittingham, Ilaria Sciamanna, Corrado Spadafora and Susan K. Logan
    Citation: Mobile DNA 2018 9:1
    Content type: Research Published on:

  18. While transposable elements (TEs) comprise the bulk of plant genomic DNA, how they contribute to genome structure and organization is still poorly understood. Especially in large genomes where TEs make the maj...

    Authors: Thomas Wicker, Alan H. Schulman, Jaakko Tanskanen, Manuel Spannagl, Sven Twardziok, Martin Mascher, Nathan M. Springer, Qing Li, Robbie Waugh, Chengdao Li, Guoping Zhang, Nils Stein, Klaus F. X. Mayer and Heidrun Gundlach
    Citation: Mobile DNA 2017 8:22
    Content type: Research Published on:

  19. Passeriformes (“perching birds” or passerines) make up more than half of all extant bird species. The genome of the zebra finch, a passerine model organism for vocal learning, was noted previously to contain t...

    Authors: Alexander Suh, Sandra Bachg, Stephen Donnellan, Leo Joseph, Jürgen Brosius, Jan Ole Kriegs and Jürgen Schmitz
    Citation: Mobile DNA 2017 8:21
    Content type: Research Published on:

  20. Intracisternal A particle (IAP) is one of the most transpositionally active retrotransposons in the mouse genome, but its expression varies between cell types. This variation is believed to arise from differen...

    Authors: Ken-ichi Shimosuga, Kei Fukuda, Hiroyuki Sasaki and Kenji Ichiyanagi
    Citation: Mobile DNA 2017 8:20
    Content type: Research Published on:

  23. Recent reports indicate that retrotransposons – a type of mobile DNA – can contribute to neuronal genetic diversity in mammals. Retrotransposons are genetic elements that mobilize via an RNA intermediate by a ...

    Authors: Debpali Sur, Raj Kishor Kustwar, Savita Budania, Anita Mahadevan, Dustin C. Hancks, Vijay Yadav, S. K. Shankar and Prabhat K. Mandal
    Citation: Mobile DNA 2017 8:17
    Content type: Research Published on:

  24. R2 elements are a clade of early branching Long Interspersed Elements (LINEs). LINEs are retrotransposable elements whose replication can have profound effects on the genomes in which they reside. No crystal o...

    Authors: M. Murshida Mahbub, Saiful M. Chowdhury and Shawn M. Christensen
    Citation: Mobile DNA 2017 8:16
    Content type: Research Published on:

  25. About half of the human genome is constituted of transposable elements, including human endogenous retroviruses (HERV). HERV sequences represent the 8% of our genetic material, deriving from exogenous infectio...

    Authors: Nicole Grandi, Marta Cadeddu, Maria Paola Pisano, Francesca Esposito, Jonas Blomberg and Enzo Tramontano
    Citation: Mobile DNA 2017 8:15
    Content type: Research Published on:

  26. Long terminal repeat retrotransposons (LTR-RTs) are major components of plant genomes. Common LTR-RTs contain the palindromic dinucleotide 5′-‘TG’–‘CA’-3′ motif at the ends. Thus, further analyses of non-canon...

    Authors: Hao Yin, Xiao Wu, Dongqing Shi, Yangyang Chen, Kaijie Qi, Zhengqiang Ma and Shaoling Zhang
    Citation: Mobile DNA 2017 8:14
    Content type: Research Published on:

  27. Transposition of P elements in the genome causes P–M hybrid dysgenesis in Drosophila melanogaster. For the P strain, the P–M phenotypes are associated with the ability to express a class of small RNAs, called piw...

    Authors: Keiko Tsuji Wakisaka, Kenji Ichiyanagi, Seiko Ohno and Masanobu Itoh
    Citation: Mobile DNA 2017 8:13
    Content type: Research Published on:

  29. Transposable elements (TEs) are highly abundant genomic parasites in eukaryote genomes. Although several genomes have been screened for TEs, so far very limited information is available regarding avian TEs and...

    Authors: Natasha Avila Bertocchi, Fabiano Pimentel Torres, Analía del Valle Garnero, Ricardo José Gunski and Gabriel Luz Wallau
    Citation: Mobile DNA 2017 8:11
    Content type: Research Published on:

  31. Polymorphic human Alu elements are excellent tools for assessing population structure, and new retrotransposition events can contribute to disease. Next-generation sequencing has greatly increased the potential t...

    Authors: Julie Feusier, David J. Witherspoon, W. Scott Watkins, Clément Goubert, Thomas A. Sasani and Lynn B. Jorde
    Citation: Mobile DNA 2017 8:9
    Content type: Research Published on:

  32. The ongoing mobilization of mammalian transposable elements (TEs) contributes to natural genetic variation. To survey the epigenetic control and expression of reporter genes inserted by L1 retrotransposition i...

    Authors: Manoj Kannan, Jingfeng Li, Sarah E. Fritz, Kathryn E. Husarek, Jonathan C. Sanford, Teresa L. Sullivan, Pawan Kumar Tiwary, Wenfeng An, Jef D. Boeke and David E. Symer
    Citation: Mobile DNA 2017 8:8
    Content type: Research Published on:

  36. Retrotransposons comprise a ubiquitous and abundant class of eukaryotic transposable elements. All members of this class rely on reverse transcriptase activity to produce a DNA copy of the element from the RNA...

    Authors: Kirill Ustyantsev, Alexandr Blinov and Georgy Smyshlyaev
    Citation: Mobile DNA 2017 8:4
    Content type: Research Published on:

  38. Transposable elements (TEs) comprise ~10% of the chicken (Gallus gallus) genome. The content of TEs is much lower than that of mammalian genomes, where TEs comprise around half of the genome. Endogenous retroviru...

    Authors: Jinmin Lee, Seyoung Mun, Dong Hee Kim, Chun-Sung Cho, Dong-Yep Oh and Kyudong Han
    Citation: Mobile DNA 2017 8:2
    Content type: Research Published on:

  40. Helitrons are eukaryotic rolling circle transposable elements that can have a large impact on host genomes due to their copy-number and their ability to capture and copy genes and regulatory elements. They occ...

    Authors: Biju Vadakkemukadiyil Chellapan, Peter van Dam, Martijn Rep, Ben J. C. Cornelissen and Like Fokkens
    Citation: Mobile DNA 2016 7:27
    Content type: Research Published on:

  42. Human endogenous retroviruses (HERVs) constitute 8% of the human genome and contribute substantially to the transcriptome. HERVs have been shown to generate RNAs that modulate host gene expression. However, ex...

    Authors: Felix Broecker, Roger Horton, Jochen Heinrich, Alexandra Franz, Michal-Ruth Schweiger, Hans Lehrach and Karin Moelling
    Citation: Mobile DNA 2016 7:25
    Content type: Research Published on:

  43. Cancer arises from a series of genetic and epigenetic changes, which result in abnormal expression or mutational activation of oncogenes, as well as suppression/inactivation of tumor suppressor genes. Aberrant...

    Authors: Artem Babaian and Dixie L. Mager
    Citation: Mobile DNA 2016 7:24
    Content type: Review Published on:

  45. Gliomas are the most common primary brain tumors in adults. We sought to understand the roles of endogenous transposable elements in these malignancies by identifying evidence of somatic retrotransposition in ...

    Authors: Pragathi Achanta, Jared P. Steranka, Zuojian Tang, Nemanja Rodić, Reema Sharma, Wan Rou Yang, Sisi Ma, Mark Grivainis, Cheng Ran Lisa Huang, Anna M. Schneider, Gary L. Gallia, Gregory J. Riggins, Alfredo Quinones-Hinojosa, David Fenyö, Jef D. Boeke and Kathleen H. Burns
    Citation: Mobile DNA 2016 7:22
    Content type: Research Published on:

  46. LINE-1 (L1) retrotransposons are a notable endogenous source of mutagenesis in mammals. Notably, cancer cells can support unusual L1 retrotransposition and L1-associated sequence rearrangement mechanisms follo...

    Authors: Patricia E. Carreira, Adam D. Ewing, Guibo Li, Stephanie N. Schauer, Kyle R. Upton, Allister C. Fagg, Santiago Morell, Michaela Kindlova, Patricia Gerdes, Sandra R. Richardson, Bo Li, Daniel J. Gerhardt, Jun Wang, Paul M. Brennan and Geoffrey J. Faulkner
    Citation: Mobile DNA 2016 7:21
    Content type: Research Published on:

  47. The National Cancer Institute-60 (NCI-60) cell lines are among the most widely used models of human cancer. They provide a platform to integrate DNA sequence information, epigenetic data, RNA and protein expre...

    Authors: John G. Zampella, Nemanja Rodić, Wan Rou Yang, Cheng Ran Lisa Huang, Jane Welch, Veena P. Gnanakkan, Toby C. Cornish, Jef D. Boeke and Kathleen H. Burns
    Citation: Mobile DNA 2016 7:20
    Content type: Research Published on:

  48. The third international conference on Transposable Elements (ICTE) was held 16–19 April 2016 in Saint Malo, France. Organized by the French Transposition Community (Research group of the CNRS: “Mobile genetic ...

    Authors: Pascale Lesage, Mireille Bétermier, Antoine Bridier-Nahmias, Michael Chandler, Séverine Chambeyron, Gael Cristofari, Nicolas Gilbert, Hadi Quesneville, Chantal Vaury and Jean-Nicolas Volff
    Citation: Mobile DNA 2016 7:19
    Content type: Meeting report Published on:

  49. Retrotransposed genes are different to other types of genes as they originate from a processed mRNA and are then inserted back into the genome. For a long time, the contribution of this mechanism to the origin...

    Authors: Pengjun Xu, Roberto Feuda, Bin Lu, Haijun Xiao, Robert I. Graham and Kongming Wu
    Citation: Mobile DNA 2016 7:18
    Content type: Short report Published on:
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ISSN: 1759-8753