Table 2 Orthoptera-TElib classification standards
From: Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation
Type | Class | Superfamily | Orthoptera-TElib name |
|---|---|---|---|
DNA transposons | Transposase | Tc1-Mariner | DNA/ Tc1-Mariner |
hAT | DNA/hAT | ||
Mutato | DNA/Mutato | ||
Merlin | DNA/Merlin | ||
P | DNA/P | ||
PiggyBac | DNA/PiggyBac | ||
PIF | DNA/PIF | ||
Harbinger | DNA/Harbinger | ||
Sola | DNA/Sola | ||
Academ | DNA/Academ | ||
CACTA | DNA/CACTA | ||
Ginger | DNA/Ginger | ||
Kolobok | DNA/Kolobok | ||
Zator | DNA/Zator | ||
Zisupton | DNA/Zisupton | ||
DNA polymerase | Maverick | DNA/Maverick | |
Tyrosine_Recombinase | Crypton | DNA/Crypton | |
Helicase | Helitron | RC/Helitron | |
Retrotransposons | LINE | CR1 | LINE/CR1 |
Dong | LINE/Dong | ||
I | LINE/I | ||
Jockey | LINE/Jockey | ||
L1, L2 | LINE/L1, L2 | ||
R1, R2 | LINE/R1, R2 | ||
RTE | LINE/RTE | ||
Rex | LINE/Rex | ||
Tad1 | LINE/Tad1 | ||
LTR | Bel-Pao | LTR/Bel-Pao | |
Copia | LTR/Copia | ||
Gypsy | LTR/Gypsy | ||
ERV | LTR/ERV | ||
PLE | Chlamys | PLE/Chlamys | |
Naiad | PLE/Naiad | ||
SINE | Alu | SINE/Alu | |
MIR | SINE/MIR | ||
U | SINE/U | ||
5 s | SINE/5 s | ||
tRNA | tRNA | ||
DIRS | DIRS | DIRS |