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Fig. 2 | Mobile DNA

Fig. 2

From: Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast

Fig. 2

McClintock 2 re-implementation improves CPU efficiency and run time on multi-core architectures. Shown are average (A) CPU efficiency and (B) run times across 5 replicates of McClintock 1 (six component methods, orange line) or McClintock 2 (same six component methods as for McClintock 1, light blue line; all 12 component methods in McClintock 2, dark blue line) applied to 50\(\times\) and 100\(\times\) Illumina 101-bp paired-end sample for S. cerevisiae strain YJM1460 (SRA: SRR800842). Error bars indicate standard deviations across replicates. To allow compatibility with McClintock 1, all runs were performed on unzipped, untrimmed fastq files and thus run times do not include these processes

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ISSN: 1759-8753