Table 1 Main metrics of Branch A runs performed on V. vinifera
Run 1 | Run 2 | Run 3 | |
|---|---|---|---|
Genome size (bp) | 486,198,630 | 486,198,630 | 486,198,630 |
Sub-genome size (bp) | 19,740,343 | 18,635,134 | 41,454,669 |
# of consensus (step 2) | 536 | 519 | 1557 |
# of selected consensus (step3) | 144 | 116 | 219 |
# of clusters | 23 | 25 | 20 |
Genome coverage (%) | 1.40 | 0.85 | 3.05 |
# of chimeras | 0 | 0 | 0 |
Conserved domains in selected consensus (step 3) | MP protease RNaseH RT RT_RNaseH RT_RNaseH_2 RVP zf-CCHC ZnF_C2HC | MP protease RNaseH RT RT_RNaseH RT_RNaseH_2 RVP zf-CCHC ZnF_C2HC | MP protease RNaseH RNase_H_like RT RT_RNaseH RT_RNaseH_2 RVP zf-CCHC ZnF_C2HC |