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Fig. 8 | Mobile DNA

Fig. 8

From: Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants

Fig. 8

Intronic TE sequences retained in gene isoforms correlates with the presence of premature termination codon. a Illustration and summarisation of four types of alternative splicing. An alternative splicing feature could appear in multiple isoforms. Notably, there are more genes than the number of associated ES features, suggesting that, for some ES events, each may involve more than one gene. b A 100% bar chart to demonstrate the productivity of gene isoforms in the four types of alternative splicing, each further grouped as TE-present (+ TE) or TE-absent (− TE). AS, alternative splicing; Alt3, alternative 3′ splicing; Alt5, alternative 5′ splicing; IR, intron retention; ES, exon skipping; PRO, productive; PTC, premature termination codon; NGO, having no start codon; NST, having a start codon but no stop codon

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ISSN: 1759-8753