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Table 1 Repetitive elements identified in the three whitefly genomes

From: Characterization of transposable elements within the Bemisia tabaci species complex

 

MEAM1

MED/Q

SSA-ECA

Published

RepBase

Custom Library

Published

RepBase

Custom Library

Published

RepBase

Custom Library

DNA

29.25

18.07

25.28

15.66

16.48

23.42

25.94

12.92

19.86

Retroelements

 

0.86

2.6

 

0.61

2.65

 

0.42

1.72

LINE

0.96

0.61

1.25

3.18

0.57

0.96

0.44

0.38

0.94

SINE

0.16

0.04

0.17

0.96

0.04

0.18

0.16

0.04

0.08

LTR

0.49

0.21

1.19

18.5

0.19

1.51

0.08

0.07

0.7

Unknown

12.96

0

16.26

1.99

0

14.81

11.9

0

15.22

Total

43.82

18.92

44.14

40.29

17.28

40.88

38.52

13.41

36.8

  1. Results of the identification of TEs reported by their respected studies, using the last publicly available RepBase library (RepBase RepeatMasker-edition20180826), and the custom-built repeat library built using the workflow described in the study
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Mobile DNA

ISSN: 1759-8753