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Table 5 Number of nucleotides detected as TEs by software analyzed. Numbers in parentheses represent fraction of the sequence covered by those TEs

From: Software evaluation for de novo detection of transposons

Reference library Zebrafish chromosome 1 Fruit fly genome Human chromosome 21
RepeatScout 26,447,536 (44.39%) 23,540,405 (17.11%) 12,266,284 (26.26%)
RepeatModeler 16,561,994 (27.80%) 15,919,335 (11.57%) 13,551,826 (29.01%)
REPET 18,712,280 (31.41%) 22,412,191 (16.29%) 8,560,157 (18.33%)
Original annotation 26,465,290 (44.42%) 23,990,534 (17.44%) 17,188,977 (36.80%)
Size of analyzed sequence 59,578,282 137,547,960 46,709,983