Table 5 Number of nucleotides detected as TEs by software analyzed. Numbers in parentheses represent fraction of the sequence covered by those TEs
From: Software evaluation for de novo detection of transposons
Reference library | Zebrafish chromosome 1 | Fruit fly genome | Human chromosome 21 |
|---|---|---|---|
RepeatScout | 26,447,536 (44.39%) | 23,540,405 (17.11%) | 12,266,284 (26.26%) |
RepeatModeler | 16,561,994 (27.80%) | 15,919,335 (11.57%) | 13,551,826 (29.01%) |
REPET | 18,712,280 (31.41%) | 22,412,191 (16.29%) | 8,560,157 (18.33%) |
Original annotation | 26,465,290 (44.42%) | 23,990,534 (17.44%) | 17,188,977 (36.80%) |
Size of analyzed sequence | 59,578,282 | 137,547,960 | 46,709,983 |