Table 1 Transposable element content for the three Danaus species with available genome assemblies
Repeat Class | Danaus plexippus (GCA_009731565.1) | Danaus chrysippus (GCA_916720795.1) | Danaus melanippus (GCA_010014825.1) | ||||||
|---|---|---|---|---|---|---|---|---|---|
No. elements | Total Length (Mb) | Percentage sequence (%) | No. elements | Total Length (Mb) | Percentage sequence (%) | No. elements | Total Length (Mb) | Percentage sequence (%) | |
Retroelement | 29,181 | 9.55 | 3.84% | 91,778 | 48.09 | 13.58% | 65,710 | 23.35 | 6.59% |
SINE | 3421 | 0.85 | 0.34% | 4973 | 1.83 | 0.52% | 33 | 0.01 | 0.00% |
LINE | 10,227 | 4.83 | 1.94% | 55,533 | 28.47 | 8.04% | 41,769 | 16.21 | 4.58% |
Penelope | 10,478 | 2.55 | 1.03% | 23,263 | 9.69 | 2.74% | 6211 | 1.67 | 0.47% |
LTR element | 5055 | 1.32 | 0.53% | 8009 | 8.09 | 2.28% | 17,697 | 5.46 | 1.54% |
DNA transposon | 3723 | 2.16 | 0.87% | 37,897 | 22.87 | 6.46% | 19,187 | 7.32 | 2.07% |
Rolling-circle | 3659 | 1.50 | 0.60% | 56,659 | 30.83 | 8.71% | 7484 | 2.41 | 0.68% |
Unclassified | 6949 | 2.08 | 0.84% | 26,595 | 1.83 | 5.22% | 28,069 | 8.51 | 2.40% |
Other | 362 | 0.15 | 0.06% | 13 | 0.00 | 0.00% | 2181 | 0.46 | 0.13% |
Total repeats | 43,874 | 15.44 | 6.21% | 212,942 | 103.62 | 33.97% | 122,631 | 42.05 | 11.87% |