Table 4 Summary of genomic distribution of TE-gene cis loci pairs in AM and AT2 cells identified by linear model test. Number of significantly observed changes (p.adjsuted < 0.05, BH adjusted) are shown per each genomics region
TE family | Intron | Intergenic | 3’UTR3 | 5’UTR |
|---|---|---|---|---|
AT2 | ||||
 SINE | 30 | 5 | 38 | 1 |
 LINE | 26 | 3 | 26 | 0 |
 LTR | 14 | 4 | 11 | 1 |
 Other | 5 | 0 | 7 | 1 |
AM | ||||
 SINE | 7 | 0 | 46 | 3 |
 LINE | 4 | 0 | 22 | 0 |
 LTR | 1 | 0 | 5 | 0 |
 Other | 1 | 0 | 14 | 1 |