Characterisation of mobile genetic elements in Mycoplasma hominis with the description of ICEHo-II, a variant mycoplasma integrative and conjugative element

Table 1 Whole-genome sequencing of 23 M. hominis strains

Strain	Short-read sequencing			Long-read sequencing
Strain	Protocol	Generated data (Mb)	Est. coverage (X)	Technology	Kit	Generated data (Mb)	Est. coverage (X)	Median read length/kb
FBG	2 × 300	1612	2067	Nanopore	SQK-RAD003	3542	4541	2.5
8958	2 × 300	157	231	Nanopore	SQK-RAD003	657	966	4.5
2539	2 × 300	2344	3119	Nanopore	SQK-LSK108	384	511	12.6
A136	2 × 300	240	344	Nanopore	EXP-NBD103 + SQK-LSK108	707	1016	13.6
SP2565	2 × 300	205	287	Nanopore		1092	1533	10.5
475	2 × 300	184	257	Nanopore		638	889	5.3
SS10	2 × 300	1648	2353	Nanopore		756	1080	5.7
SS25	2 × 300	1865	2772	Nanopore		732	1088	8.3
VO31120	2 × 250	89	130	Nanopore		728	1069	6.3
SP10291	2 × 250	80	106	Nanopore		562	749	4.4
SP3615	2 × 250	99	138	PacBio	SMRTbell Template Prep Kit 1.0 + Sequel Binding and Internal Control Kit 2.1	7447	10,401	2.9
727 J				Nanopore	EXP-NBD103 + SQK-LSK108	17	21	5.2
942 J				Nanopore		38	47	44.1
2740				Nanopore		15	16	4.1
7388VA				Nanopore		39	47	41.2
7447VA				Nanopore		59	66	1.7
10936VA				Nanopore		53	66	3.0
12256 U				Nanopore		35	42	14.5
14352VA				Nanopore		37	47	32.3
16753				Nanopore		7	9	4.4
18847				Nanopore		38	49	45.7
19791				Nanopore		44	52	4.6
21127VA				Nanopore		38	44	42.4

ISSN: 1759-8753