Fig. 3

Mapping of KZNF ChIP-seq data to the UCSC Repeat Browser. a Workflow for analyzing KZNF ChIP-seq. Data from existing collections was downloaded from SRA, analyzed via standard ChIP-seq workflows and the resulting summits mapped back to the RB for analysis. Mapping of individual summits produces a “meta-summit” (red arrow) that can be used for downstream analysis and which is stored separately in another annotation track. b Example of a repeat family, HERVH-full (a reconstituted primate endogenous retrovirus containing both LTRs and the internal region) with lifted annotations and datasets. Shown are aligments to other Repeat Browser Consensuses (e.g. solo LTRs), tracks of repeat annotations, gene overlaps, and KZNF meta-summits