Fig. 3
From: Tools and best practices for retrotransposon analysis using high-throughput sequencing data
Mappability of the different mouse retrotransposon families. a True Positive (TP) rate versus mapping percentage per TE family using STAR and paired-end library with mouse simulated TE-derived reads. Black triangle represents the True Positive rate and percentage of mapping for the entire simulated library. b Mapping percentage versus age of L1Md families. Dot colors represent the True Positive (TP) rate. Ages are obtained from previously published divergence analysis study [24] c Gain of True Positive in percentage versus gain of mapping in percentage when PE library are used in comparison to SE library