Table 2 Palindromes within sequences flanking the insertion site. We used the paldpl program to detect approximate palindromes of at least 3 bp with no more than 30% mismatches or indels. This analysis was done in native flanking sequences identified in plant genomes and their randomized (permutated) counterparts, to control for base content effects. We carried out a paired t-test for difference in calculated stem lengths of the native and randomized palindromes
Group | Count | Palindrome length | Paired t-test p-value | |
|---|---|---|---|---|
native | random | |||
ALL | 14,813 | 5.5 | 5.4 | 0.000004*** |
nested | 830 | 5.2 | 5.3 | 0.50~ |
non-nested | 13,983 | 5.5 | 5.4 | 0.000001*** |
Ale | 1314 | 5.5 | 5.5 | 0.93 |
Alesia | 21 | 5.8 | 5.7 | 0.75 |
Angela | 91 | 5.3 | 5.3 | 0.93 |
Athila | 1088 | 5.5 | 5.3 | 0.008** |
Bianca | 443 | 6.0 | 6.1 | 0.97~ |
Bryco | 29 | 5.8 | 5.9 | 0.95~ |
CRM | 482 | 5.3 | 5.2 | 0.53 |
Galadriel | 49 | 5.4 | 5.1 | 0.40 |
Ikeros | 348 | 5.5 | 5.3 | 0.10 |
Ivana | 1018 | 5.5 | 5.3 | 0.008** |
Ogre | 1520 | 5.5 | 5.4 | 0.64 |
Phygy | 285 | 5.3 | 5.3 | 0.94 |
Reina | 852 | 5.4 | 5.4 | 0.67 |
Retand | 2078 | 5.4 | 5.3 | 0.37 |
Sire | 1225 | 5.4 | 5.2 | 0.001** |
Tcn1 | 1947 | 5.5 | 5.4 | 0.001** |
TAR | 477 | 5.5 | 5.4 | 0.14 |
Tekay | 1029 | 5.4 | 5.4 | 0.61 |
Tork | 517 | 5.6 | 5.8 | 0.05*~ |