Fig. 6
From: Can-SINE dynamics in the giant panda and three other Caniformia genomes
Median-joining network analysis. a Major Can_SINE consensus sequences from Repbase and COSEG PPS consensuses. The consensus sequences of PPS_SINEC1_AMe and PPS_SINEC1B_AMe generated by COSEG are displayed as red circles. The consensus sequences of SINEC1_AMe and SINEC1B_AMe from Repbase are displayed as cyan circles. Other Repbase Can_SINE consensus sequences are displayed as yellow circles. There are 26 duplications belong to SINEC1B_AMe consensus sequence in Repbase when compared with the PPS_SINEC1B_AMe. The ‘||’ represents gaps more than 1 bp. The two main clades, Caniformia_CF and Feliformia_Fc, are indicated by blue and red circle, respectively. b COSEG consensuses of SINEC1_AMe subfamilies and Repbase SINEC1_AMe consensus (cyan). c COSEG consensuses of SINEC1B_AMe subfamilies and Repbase SINEC1B_AMe (cyan). All blue circles represent consensus sequences reconstructed by COSEG in the panda genome. Circle size represents the subfamily size except the Repbase consensuses