Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

Table 1 Ty4 and Tsu4 content in S. cerevisiae and S. paradoxus PacBio assemblies from Yue et al. [13]

Species	Strain	# Ty4 full	# Ty4 truncated	# Ty4 solo LTR	# Tsu4 full	# Tsu4 truncated	# Tsu4 solo LTR
Scer	S288c	3	0	14	0	0	0
Scer	DBVPG6044	0	0	18	0	0	0
Scer	DBVPG6765	0	0	5	0	0	0
Scer	SK1	0	0	14	0	0	0
Scer	Y12	4	1	14	0	0	0
Scer	YPS128	4	0	13	0	0	0
Scer	UWOPS03-461.4	0	0	60	0	0	0
Spar	CBS432	0	2	46	0	0	0
Spar	N44	3	3	106	0	0	0
Spar	YPS138	0	0	49	1	0	18
Spar	UFRJ50816	0	1	45	22	2	105
Spar	UWOPS91-917.1	0	0	40	1	1	88

Numbers of full-length elements (both LTRs present and internal region present with > 95% coverage of canonical internal region), truncated elements (internal region present with < 95% coverage of canonical internal region), or solo LTRs (no match to internal region) were estimated using a RepeatMasker (version 4.0.5) based strategy and a custom library of Ty elements from [11] supplemented with S. paradoxusTsu4

ISSN: 1759-8753