Table 1 Summary of TGTT and AACA elements in four Rosaceae genomes
Family | Superfamily | No. of intact element | Length of LTR (bp) | Length of intact element (bp) | Start and end of LTR (Plus) | Length of TSDs | Ave. age |
|---|---|---|---|---|---|---|---|
| Â | Lineage | (mys) | |||||
PbrTGTT1 | Copia/Ale | 8 | 184 | 5049 | TG..TT | 5 | 2.32 |
MdTGTT1 | Copia/Ale | 6 | 179 | 5113 | TG..TT | 5 | 0.91 |
PpTGTT1 | Copia/Ale | 4 | 179 | 5009 | TG..TT | 5 | 0.16 |
PmTGTT1 | Copia/ Ale | 2 | 180 | 5055 | TG..TT | 5 | 0.65 |
PbrTGTT2 | Copia/ Ale | 22 | 180 | 5039 | TG..TT | 5 | 0.3 |
MdTGTT2 | Copia/ Ale | 3 | 169 | 5046 | TG..TT | 5 | 0.92 |
PbrTGTT3 | Copia/ Ale | 2 | 152 | 5114 | TG..TT | 4 | 0.38 |
PbrTGTT4 | Copia/ Ale | 3 | 229 | 4999 | TG..TT | 6 | 0.28 |
Subtotal/average | Â | 50 | 180 | 5053 | TG..TT | 5 | 0.74 |
PbrAACA1 | Copia/ Ale | 7 | 266 | 4924 | AA..CA | 6 | 0.94 |
PmAACA1 | Copia/ Ale | 2 | 251 | 4883 | AA..CA | 6 | 0.15 |
PbrAACA2 | Copia/ Ale | 4 | 201 | 4857 | AA..CA | 6 | 0.05 |
PbrAACA3 | TRIM | 4 | 244 | 2129 | AA..CA | 6 | 1.85 |
PbrAACA4 | TRIM | 16 | 203/242 | 2364/2522 | AA..CA | 6 | 1.84 |
MdAACA4 | TRIM | 8 | 207/242 | 2606/2735 | AA..CA | 6 | 1.03 |
Subtotal/average | Â | 41 | 232 | 3378 | AA..CA | 6 | 1.26 |