Skip to main content

Table 1 VL30 elements closely located to mouse genes

From: Genomic analysis of mouse VL30 retrotransposons

Region

VL30

Associated gene, (distance to TSS)

Orientationa

Possible role

Adjacent to TSS

4qA1-2

Rbm12b (−4469)

+

Alternative promoter, Enhancer Or Effects in gene expression

4qE2

Ube4b (−9958)

5qG2

Rhbdd2 (−6349)

+

6qA2

Naa38 (−3143)

+

7qA3-2

Eid2 (−8861)

+

8qA4

Gtf2e2 (−15672)

+

8qB33

Ap1m1 (−3642)

+

8qC3

Gm6531 (−12209)

+

8qD3

Tmco7 (−4073)

+

12qC1

Fbxo33 (−5398)

13qA5

Cks2 (−8731)

+

15qE1

Ndufa6 (−10978)

18qA1-2

Rbbp8 (−12595)

+

8qE1tr

Afg3l1 (−3684)

RLTR1C-chr6-1

Tmem168 (−3944)

RLTR1D-chr5-3

Camkk2 (−2560)

+

RLTR1C-chr4-1

Zmym1 (−2767)

+

RLTR1D-chr8-2

Tnks (−5185)

+

RLTR1D-chr7-5

Crebzf (−1957)

+

RLTR1D-chr4-6

Sfpq (−18784)

RLTR6_Mm-chr5-4

Gpr113 (−865)

RLTR6_Mm-chr6-2

Avl9 (−4915)

RLTR1C-chr4-2

Fam54b (−3954)

+

RLTR6_Mm-chr5-6

Mrfap1 (−2311)

+

RLTR1D-chr7-2

Ceacam5 (−4916)

RLTR6_Mm-chr7-2

Zfp568 (−4304)

+

RLTR6_Mm-chr11-2

Rpl23 (−2735)

+

RLTR1C-chr13-1

Mrpl32 (−4663)

RLTR1D-chr13-2

Ankdd1b (−3400)

TSS within VL30

1qD

AK077157 (0)

Promoter

2qD

Olfr1033 (0)

+

4qB3tr

Gm12505 (0)

18qA2

AK076984 (0)

Intronic

1qA2

Sntg1 (+62021)

Alternative splicing region or disruption of transcription

2qA3

Abi1 (+27853)

6qB1

TCR-beta chain (+20882)

+

6qG2

Slco1a6

7qA3

gm6902

12qA11

Slc7a15

12qF1

Tdrd9 (+47580)

+

12qa13

Gm4983

+

7qc3

A330076H08Rik

7qE2tr

Gm1966 (+26035)

7qE2-2tr

Neu3 (+9192)

RLTR1D-chr14-2

Dydc2 (+5144)

RLTR1D-chr1-12

Parp1 (+5484)

RLTR6_Mm-chr2-2

Ap4e1 (+13898)

+

RLTR6_Mm-chr2-3

Plk1s1 (+34325)

+

RLTR6_Mm-chr2-4

a (+15736)

+

RLTR1C-chr3-1

Slc7a12 (+4176)

RLTR6_Mm-chr5-9

N4bp2l2 (+1602)

+

RLTR6_Mm-chr8-2

Gsr (+11508)

+

RLTR1C-chr9-2

Rasgrf1 (+76260)

RLTR1D-chrX-2

Otc (+44070)

RLTR1D-chr14-2

Dydc2 (+5144)

End of gene

RLTR6_Mm-chr11-1

Wdr92 (+22760)

+

Transcription termination

RLTR1D-chr6-3

BC064078

+

  1. a+ same orientation to that of gene, − opposite orientation