Skip to main content

Table 1 VL30 elements closely located to mouse genes

From: Genomic analysis of mouse VL30 retrotransposons

Region VL30 Associated gene, (distance to TSS) Orientationa Possible role
Adjacent to TSS 4qA1-2 Rbm12b (−4469) + Alternative promoter, Enhancer Or Effects in gene expression
4qE2 Ube4b (−9958)
5qG2 Rhbdd2 (−6349) +
6qA2 Naa38 (−3143) +
7qA3-2 Eid2 (−8861) +
8qA4 Gtf2e2 (−15672) +
8qB33 Ap1m1 (−3642) +
8qC3 Gm6531 (−12209) +
8qD3 Tmco7 (−4073) +
12qC1 Fbxo33 (−5398)
13qA5 Cks2 (−8731) +
15qE1 Ndufa6 (−10978)
18qA1-2 Rbbp8 (−12595) +
8qE1tr Afg3l1 (−3684)
RLTR1C-chr6-1 Tmem168 (−3944)
RLTR1D-chr5-3 Camkk2 (−2560) +
RLTR1C-chr4-1 Zmym1 (−2767) +
RLTR1D-chr8-2 Tnks (−5185) +
RLTR1D-chr7-5 Crebzf (−1957) +
RLTR1D-chr4-6 Sfpq (−18784)
RLTR6_Mm-chr5-4 Gpr113 (−865)
RLTR6_Mm-chr6-2 Avl9 (−4915)
RLTR1C-chr4-2 Fam54b (−3954) +
RLTR6_Mm-chr5-6 Mrfap1 (−2311) +
RLTR1D-chr7-2 Ceacam5 (−4916)
RLTR6_Mm-chr7-2 Zfp568 (−4304) +
RLTR6_Mm-chr11-2 Rpl23 (−2735) +
RLTR1C-chr13-1 Mrpl32 (−4663)
RLTR1D-chr13-2 Ankdd1b (−3400)
TSS within VL30 1qD AK077157 (0) Promoter
2qD Olfr1033 (0) +
4qB3tr Gm12505 (0)
18qA2 AK076984 (0)
Intronic 1qA2 Sntg1 (+62021) Alternative splicing region or disruption of transcription
2qA3 Abi1 (+27853)
6qB1 TCR-beta chain (+20882) +
6qG2 Slco1a6
7qA3 gm6902
12qA11 Slc7a15
12qF1 Tdrd9 (+47580) +
12qa13 Gm4983 +
7qc3 A330076H08Rik
7qE2tr Gm1966 (+26035)
7qE2-2tr Neu3 (+9192)
RLTR1D-chr14-2 Dydc2 (+5144)
RLTR1D-chr1-12 Parp1 (+5484)
RLTR6_Mm-chr2-2 Ap4e1 (+13898) +
RLTR6_Mm-chr2-3 Plk1s1 (+34325) +
RLTR6_Mm-chr2-4 a (+15736) +
RLTR1C-chr3-1 Slc7a12 (+4176)
RLTR6_Mm-chr5-9 N4bp2l2 (+1602) +
RLTR6_Mm-chr8-2 Gsr (+11508) +
RLTR1C-chr9-2 Rasgrf1 (+76260)
RLTR1D-chrX-2 Otc (+44070)
RLTR1D-chr14-2 Dydc2 (+5144)
End of gene RLTR6_Mm-chr11-1 Wdr92 (+22760) + Transcription termination
RLTR1D-chr6-3 BC064078 +
  1. a+ same orientation to that of gene, − opposite orientation