Table 1 VL30 elements closely located to mouse genes
Region | VL30 | Associated gene, (distance to TSS) | Orientationa | Possible role |
|---|---|---|---|---|
Adjacent to TSS | 4qA1-2 | Rbm12b (−4469) | + | Alternative promoter, Enhancer Or Effects in gene expression |
4qE2 | Ube4b (−9958) | − | ||
5qG2 | Rhbdd2 (−6349) | + | ||
6qA2 | Naa38 (−3143) | + | ||
7qA3-2 | Eid2 (−8861) | + | ||
8qA4 | Gtf2e2 (−15672) | + | ||
8qB33 | Ap1m1 (−3642) | + | ||
8qC3 | Gm6531 (−12209) | + | ||
8qD3 | Tmco7 (−4073) | + | ||
12qC1 | Fbxo33 (−5398) | − | ||
13qA5 | Cks2 (−8731) | + | ||
15qE1 | Ndufa6 (−10978) | − | ||
18qA1-2 | Rbbp8 (−12595) | + | ||
8qE1tr | Afg3l1 (−3684) | − | ||
RLTR1C-chr6-1 | Tmem168 (−3944) | − | ||
RLTR1D-chr5-3 | Camkk2 (−2560) | + | ||
RLTR1C-chr4-1 | Zmym1 (−2767) | + | ||
RLTR1D-chr8-2 | Tnks (−5185) | + | ||
RLTR1D-chr7-5 | Crebzf (−1957) | + | ||
RLTR1D-chr4-6 | Sfpq (−18784) | − | ||
RLTR6_Mm-chr5-4 | Gpr113 (−865) | − | ||
RLTR6_Mm-chr6-2 | Avl9 (−4915) | − | ||
RLTR1C-chr4-2 | Fam54b (−3954) | + | ||
RLTR6_Mm-chr5-6 | Mrfap1 (−2311) | + | ||
RLTR1D-chr7-2 | Ceacam5 (−4916) | − | ||
RLTR6_Mm-chr7-2 | Zfp568 (−4304) | + | ||
RLTR6_Mm-chr11-2 | Rpl23 (−2735) | + | ||
RLTR1C-chr13-1 | Mrpl32 (−4663) | − | ||
RLTR1D-chr13-2 | Ankdd1b (−3400) | − | ||
TSS within VL30 | 1qD | AK077157 (0) | − | Promoter |
2qD | Olfr1033 (0) | + | ||
4qB3tr | Gm12505 (0) | − | ||
18qA2 | AK076984 (0) | − | ||
Intronic | 1qA2 | Sntg1 (+62021) | − | Alternative splicing region or disruption of transcription |
2qA3 | Abi1 (+27853) | − | ||
6qB1 | TCR-beta chain (+20882) | + | ||
6qG2 | Slco1a6 | − | ||
7qA3 | gm6902 | − | ||
12qA11 | Slc7a15 | − | ||
12qF1 | Tdrd9 (+47580) | + | ||
12qa13 | Gm4983 | + | ||
7qc3 | A330076H08Rik | − | ||
7qE2tr | Gm1966 (+26035) | − | ||
7qE2-2tr | Neu3 (+9192) | − | ||
RLTR1D-chr14-2 | Dydc2 (+5144) | − | ||
RLTR1D-chr1-12 | Parp1 (+5484) | − | ||
RLTR6_Mm-chr2-2 | Ap4e1 (+13898) | + | ||
RLTR6_Mm-chr2-3 | Plk1s1 (+34325) | + | ||
RLTR6_Mm-chr2-4 | a (+15736) | + | ||
RLTR1C-chr3-1 | Slc7a12 (+4176) | − | ||
RLTR6_Mm-chr5-9 | N4bp2l2 (+1602) | + | ||
RLTR6_Mm-chr8-2 | Gsr (+11508) | + | ||
RLTR1C-chr9-2 | Rasgrf1 (+76260) | − | ||
RLTR1D-chrX-2 | Otc (+44070) | − | ||
RLTR1D-chr14-2 | Dydc2 (+5144) | − | ||
End of gene | RLTR6_Mm-chr11-1 | Wdr92 (+22760) | + | Transcription termination |
RLTR1D-chr6-3 | BC064078 | + |