Table 2 LTR retrotransposon families investigated in this study
Family | Size (kb) | Copy number/total retrotransposons | Type | Ref Seq | ID of similar sequence in Repbase |
|---|---|---|---|---|---|
Family I | 5141 | 29/373 | copia | AJSU01007348.1 (8605–13,745 bp) | Copia-24_PX |
Family II | 5355 | 15/373 | copia | AJSU01000113.1 (27,402–32,756 bp) | Copia-106_Mad |
Family III | 6482 | 20/373 | copia | AJSU01017137.1 (16,748–23,229 bp) | Copia-90_Mad |
Family IV | 5123 | 14/373 | copia | AJSU01025615.1 (15,180–10,058 bp) | Copia-53_Mad |
Family V | 5670 | 5/67 | gypsy | AJSU01016963.1 (42,874–37,205 bp) | Gypsy-5_Mad |