Table 2 Terminal Inverted Repeats (TIRs) of BrickBuilt elements from strain ATCC 33277. Terminal Inverted Repeats and family of selected IS and MITE-like elements in Porphyromonas gingivalis as well as ISNme1 from Neisseria meningitidis
Locus (33277) | TIR 5′ (nt) | TIR 3′ (nt) | Both TIRs |
 BrickBuilt_1 |  | CCGAAAGGTCTC |  |
 BrickBuilt_2 |  | CCGAAAGGTCTC |  |
 BrickBuilt_3 | AAGACCTTTGCA | CCGAAAGGTCTC | YES |
 BrickBuilt_4 | GAGACCTTTGCA | TGCAAAGGTCTC | YES |
 BrickBuilt_5 | GAGACCTTTGCA | CGCAAAGGTCTC | YES |
 BrickBuilt_6 |  | CACAAAGGTCTT |  |
 BrickBuilt_7 |  |  |  |
 BrickBuilt_8 |  | TGCAAAAGTCTC |  |
 BrickBuilt_9 |  |  |  |
 BrickBuilt_10 |  |  |  |
 BrickBuilt_11 |  |  |  |
 BrickBuilt_12 |  | GACAAAGGTCTC |  |
 BrickBuilt_13 |  |  |  |
 BrickBuilt_14 |  |  |  |
 BrickBuilt_15 | GAGCCCTTTGCA |  |  |
 BrickBuilt_16 |  |  |  |
 BrickBuilt_17 | GAGCCCTTCGCA |  |  |
 BrickBuilt_18 | GAGCCCTTTGCA | TGCAAAGGCCTC | YES |
 BrickBuilt_19 | GAGCCCTTTGCA |  |  |
Element | Left TIR | Right TIR | Family |
 ISPg1 | GAGACCATTGCA | TTCAAAGGTCTC | IS5 |
 ISPg3 | ACGTCAGTTCGA | TCGAACTGACGT | IS5 |
 ISPg4 | GAGACTGTTGCA | CGCAACAGTCTC | IS5 |
 ISPg9 | GAGACCATTGCA |  | IS5 |
 MITE239 | ACGTGAGTTCGATATAAAGGAA | TTCGCTTAAATCGAACTGGCGT |  |
 MITEPgRS/MITE464 | GAGACTGTTGCA | TGCAACGGTCTC |  |
 MITE700 | ACGTCATTCGA | TCGAACTCACGT |  |
 BrickBuilt | GAGACCTTCGCA | TGAAAGGTCTC |  |
 Nsm ISNme1 | GAGACCTTTGCAAAA | TTTTGCAAAGGTCTC | IS5 |