Table 2 Percent coverage of each chromosome and for each class of TE in H. sapiens with and without the -- strict option
From: “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
Chromosome | Without --strict option | With --strict option | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
DNA | LINE | SINE | LTR | Total | DNA | LINE | SINE | LTR | Total | |
Chr 1 | 3.28 | 20.03 | 14.30 | 8.35 | 45.96 | 1.48 | 8.75 | 10.48 | 4.73 | 25.44 |
Chr 2 | 3.86 | 22.56 | 11.89 | 9.27 | 47.58 | 1.62 | 10.19 | 8.83 | 5.06 | 25.70 |
Chr 3 | 4.05 | 23.50 | 12.14 | 9.95 | 49.64 | 1.68 | 11.60 | 8.63 | 5.44 | 27.35 |
Chr 4 | 3.72 | 24.45 | 10.26 | 11.61 | 50.04 | 1.67 | 12.40 | 7.30 | 6.49 | 27.86 |
Chr 5 | 3.86 | 23.86 | 11.34 | 10.1 | 49.16 | 1.61 | 11.91 | 8.13 | 5.46 | 27.11 |
Chr 6 | 3.82 | 23.17 | 11.57 | 9.72 | 48.28 | 1.68 | 11.23 | 8.74 | 5.66 | 27.31 |
Chr 7 | 3.55 | 21.73 | 13.88 | 9.00 | 48.16 | 1.54 | 9.80 | 11.13 | 5.20 | 27.67 |
Chr 8 | 3.63 | 22.93 | 11.98 | 10.12 | 48.66 | 1.56 | 10.65 | 8.59 | 5.57 | 26.37 |
Chr 9 | 3.10 | 19.50 | 12.18 | 7.90 | 42.68 | 1.28 | 8.94 | 8.92 | 4.29 | 23.43 |
Chr 10 | 3.67 | 20.79 | 13.91 | 8.50 | 46.87 | 1.52 | 9.20 | 10.59 | 4.82 | 26.13 |
Chr 11 | 3.42 | 22.95 | 13.47 | 9.10 | 48.94 | 1.45 | 10.85 | 9.12 | 5.13 | 26.55 |
Chr 12 | 3.75 | 21.62 | 14.91 | 9.55 | 49.83 | 1.53 | 10.03 | 11.27 | 5.31 | 28.14 |
Chr 13 | 3.08 | 19.23 | 8.53 | 8.95 | 39.79 | 1.35 | 8.62 | 6.41 | 4.99 | 21.37 |
Chr 14 | 3.03 | 18.53 | 11.4 | 8.24 | 41.20 | 1.35 | 8.79 | 8.65 | 4.70 | 23.49 |
Chr 15 | 3.02 | 17.61 | 12.52 | 6.30 | 39.45 | 1.26 | 7.42 | 9.65 | 3.28 | 21.61 |
Chr 16 | 3.12 | 14.55 | 18.05 | 7.32 | 43.04 | 1.03 | 5.52 | 14.18 | 3.58 | 24.31 |
Chr 17 | 3.20 | 15.36 | 21.55 | 6.48 | 46.59 | 1.33 | 5.45 | 17.97 | 3.53 | 28.28 |
Chr 18 | 3.62 | 21.54 | 10.74 | 9.21 | 45.11 | 1.52 | 9.08 | 8.00 | 4.97 | 23.57 |
Chr 19 | 2.13 | 13.43 | 26.98 | 8.58 | 51.12 | 0.74 | 5.09 | 24.11 | 5.27 | 35.21 |
Chr 20 | 4.17 | 18.84 | 15.90 | 8.70 | 47.61 | 1.50 | 7.15 | 11.79 | 3.71 | 24.15 |
Chr 21 | 2.50 | 14.53 | 8.30 | 8.97 | 34.30 | 1.01 | 6.18 | 6.67 | 5.01 | 18.87 |
Chr 22 | 1.95 | 10.95 | 15.33 | 4.64 | 32.87 | 0.79 | 3.34 | 12.02 | 2.39 | 18.54 |
Chr X | 3.26 | 33.71 | 10.42 | 11.38 | 58.77 | 1.50 | 20.70 | 7.80 | 7.41 | 37.41 |
Chr Y | 0.79 | 11.16 | 4.38 | 7.51 | 23.84 | 0.29 | 6.96 | 3.41 | 5.09 | 15.75 |
Average | 3.23 | 19.85 | 13.16 | 8.73 | 44.98 | 1.34 | 9.16 | 10.10 | 4.88 | 25.48 |