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Table 2 Percent coverage of each chromosome and for each class of TE in H. sapiens with and without the -- strict option

From: “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

Chromosome Without --strict option With --strict option
  DNA LINE SINE LTR Total DNA LINE SINE LTR Total
Chr 1 3.28 20.03 14.30 8.35 45.96 1.48 8.75 10.48 4.73 25.44
Chr 2 3.86 22.56 11.89 9.27 47.58 1.62 10.19 8.83 5.06 25.70
Chr 3 4.05 23.50 12.14 9.95 49.64 1.68 11.60 8.63 5.44 27.35
Chr 4 3.72 24.45 10.26 11.61 50.04 1.67 12.40 7.30 6.49 27.86
Chr 5 3.86 23.86 11.34 10.1 49.16 1.61 11.91 8.13 5.46 27.11
Chr 6 3.82 23.17 11.57 9.72 48.28 1.68 11.23 8.74 5.66 27.31
Chr 7 3.55 21.73 13.88 9.00 48.16 1.54 9.80 11.13 5.20 27.67
Chr 8 3.63 22.93 11.98 10.12 48.66 1.56 10.65 8.59 5.57 26.37
Chr 9 3.10 19.50 12.18 7.90 42.68 1.28 8.94 8.92 4.29 23.43
Chr 10 3.67 20.79 13.91 8.50 46.87 1.52 9.20 10.59 4.82 26.13
Chr 11 3.42 22.95 13.47 9.10 48.94 1.45 10.85 9.12 5.13 26.55
Chr 12 3.75 21.62 14.91 9.55 49.83 1.53 10.03 11.27 5.31 28.14
Chr 13 3.08 19.23 8.53 8.95 39.79 1.35 8.62 6.41 4.99 21.37
Chr 14 3.03 18.53 11.4 8.24 41.20 1.35 8.79 8.65 4.70 23.49
Chr 15 3.02 17.61 12.52 6.30 39.45 1.26 7.42 9.65 3.28 21.61
Chr 16 3.12 14.55 18.05 7.32 43.04 1.03 5.52 14.18 3.58 24.31
Chr 17 3.20 15.36 21.55 6.48 46.59 1.33 5.45 17.97 3.53 28.28
Chr 18 3.62 21.54 10.74 9.21 45.11 1.52 9.08 8.00 4.97 23.57
Chr 19 2.13 13.43 26.98 8.58 51.12 0.74 5.09 24.11 5.27 35.21
Chr 20 4.17 18.84 15.90 8.70 47.61 1.50 7.15 11.79 3.71 24.15
Chr 21 2.50 14.53 8.30 8.97 34.30 1.01 6.18 6.67 5.01 18.87
Chr 22 1.95 10.95 15.33 4.64 32.87 0.79 3.34 12.02 2.39 18.54
Chr X 3.26 33.71 10.42 11.38 58.77 1.50 20.70 7.80 7.41 37.41
Chr Y 0.79 11.16 4.38 7.51 23.84 0.29 6.96 3.41 5.09 15.75
Average 3.23 19.85 13.16 8.73 44.98 1.34 9.16 10.10 4.88 25.48
  1. LINE, long interspersed nuclear element; LTR, long terminal repeat; SINE, short interspersed nuclear element; TE, transposable element.