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Table 2 Repeat features at the translocation regions studied

From: Translocation junctions in TCF3-PBX1 acute lymphoblastic leukemia/lymphoma cluster near transposable elements

Translocation junction regions Junctions occurring in repeats (%) Junction to the nearest repeat‡ (bp) P value for interaction
E2A = PBX1 (TCF3-PBX1) Observed Expected
  TCF3 20 (67) 1 42.46 <0.001†/<0.001*
  PBX1 1 (3) 384.2 272.24 0.999
BCR-ABL     
  BCR 14 (35) 293.5 251.37 0.978
  ABL 18 (67) 37.74 171.48 0.017†/0.449*
Therapy-related MLLs     
  t-MLL 2 (15.4) 34.54 95.38 0.373
  t-MLLT3 3 (23) 242.85 264.64 0.949
MLLs rearranged     
  MLL 72 (35.3) 156 108.78 0.999
  AFF1 46 (21.1) 208.31 144.39 0.999
  MLL 6 (50) 50.34 82.35 0.798
  MLLT3 2 (16.7) 209.1 289.9 0.831
ETV6-RUNX1     
  ETV6 15 (29) 121.11 113.64 0.987
  RUNX1 6 (11) 284.54 245.3 0.966
RUNX1-RUNX1TL     
  RUNX1 18 (27) 236.48 243.63 0.949
  RUNX1TL 3 (2) 494.21 264.41 0.999
MYC-IGH     
  MYC 8 (6) 399.1 116.44 0.999
  IGH 29 (63) 668.86 298.77 0.999
BCL6-IGH     
  BCL6 2 (5) 151.81 174.16 0.763
  IGH 9 (64) 124.86 190.5 0.978
SCL-TCRA     
  SCL 1 (6) 284.43 192.11 0.998
  TCRA 5 (16) 648.96 396.16 0.999
LMO2-TCRA     
  LMO2 5 (17) 160.86 208.56 0.704
  TCRA 3 (10) 545.1 194.47 1
  1. ‡Distance, expressed in number of nucleotides, from translocation junction to the nearest repeat.
  2. P value for interaction between translocation junction to the nearest repeat (including repeating elements and tandem repeats).
  3. *P value for interaction between translocation junction to the nearest repeating element.