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Table 2 Candidate loci and insertion site characteristics

From: Heads or tails: L1 insertion-associated 5' homopolymeric sequences

Locus Coordinates TSD L1 bp ins Non L1 seq Poly(T) Lineage
pT44 chr1:80856707-80866878 14 653 487 23 H
pT79 chr11:104048005-104058372 11 1960 1599 25 H
pT415 chr3:181306257-181316602 16 339 0 29 H
pT512 chr5:83637882-83648058 18 1406 1165 26 H
pT546 chr6:69193896-69204810 16 927 0 23 H
pT439 chr3:62933035-62943400 9 1116 758 21 HC
pT684* chr7:117312394-117332534 14 157 0 20 HC
pT1313 chr3:147198235-147208351 17 369 257 23 C
pT1350 chr6:55186000-55196486 15 470 14 32 C
pT1362 chr7:89293399-89303535 9 2399 2263 26 C
pT1389 chr9:97107198-97117833 14 691 68 20 C
pT43 chr1:72796354-72806494 16 112 0 24 HCG
pT1223 chr1:59822991-59833038 17 1022 4 20 HCG
pT1279 chr18:44020257-44030483 15 2015 1813 18 HCG
pT144 chr13:101611291-101621562 8 1145 866 22 HCGO
pT145 chr13:104133249-104143781 11 529 0 22 HCGO
pT325 chr2:101586549-101596728 16 181 0 27 HCGO
pT424 chr3:199260458-199270665 14 734 536 18 HCGO
pT458 chr4:172846531-172856775 17 234 4 19 HCGO
pT1309 chr2b:226703516-226713749 13 228 0 24 HCGO
pT1448 chr11:86639999-86650182 9 182 0 30 HCGO
pT1404 chr1:181059564-181069827 15 913 654 23 O
pT1416 chr1:7600379-7611178 13 791 0 21 O
pT1431 chr11:100399372-100409835 10 456 12 21 O
pT1465 chr13:57849422-57859574 15 175 27 17 O
pT1535 chr2a:44695595-44705774 15 165 0 23 O
pT1538 chr2a:70854440-70864821 11 377 0 23 O
pT1554 chr2b:66983758-66993962 17 174 20 21 O
pT1709 chr10:72142313-72152683 13 379 0 21 Rh
pT1712 chr11:100852416-100862528 20 105 0 34 Rh
pT1743 chr13:4175512-4185626 13 98 0 19 Rh
pT1785 chr17:40754900-40765052 15 1390 1244 34 Rh
pT1790 chr17:68109266-68119556 14 294 0 39 Rh
pT1798 chr18:71236237-71246385 7 252 118 19 Rh
pT1834 chr3:159608718-159618930 17 457 257 14 Rh
pT1846 chr3:75648970-75659040 14 61 8 16 Rh
pT1855 chr4:153605855-153616110 17 252 0 21 Rh
pT1896 chr6:3989032-3999144 15 97 0 36 Rh
pT1796 chr18:36523812-36534192 9 665 294 17 HCGORh
  1. * Indicates locus previously described in [29]
  2. Ins, insertion, Seq, sequence; TSD, target site duplication