Table 2 Candidate loci and insertion site characteristics
From: Heads or tails: L1 insertion-associated 5' homopolymeric sequences
Locus | Coordinates | TSD | L1 bp ins | Non L1 seq | Poly(T) | Lineage |
|---|---|---|---|---|---|---|
pT44 | chr1:80856707-80866878 | 14 | 653 | 487 | 23 | H |
pT79 | chr11:104048005-104058372 | 11 | 1960 | 1599 | 25 | H |
pT415 | chr3:181306257-181316602 | 16 | 339 | 0 | 29 | H |
pT512 | chr5:83637882-83648058 | 18 | 1406 | 1165 | 26 | H |
pT546 | chr6:69193896-69204810 | 16 | 927 | 0 | 23 | H |
pT439 | chr3:62933035-62943400 | 9 | 1116 | 758 | 21 | HC |
pT684* | chr7:117312394-117332534 | 14 | 157 | 0 | 20 | HC |
pT1313 | chr3:147198235-147208351 | 17 | 369 | 257 | 23 | C |
pT1350 | chr6:55186000-55196486 | 15 | 470 | 14 | 32 | C |
pT1362 | chr7:89293399-89303535 | 9 | 2399 | 2263 | 26 | C |
pT1389 | chr9:97107198-97117833 | 14 | 691 | 68 | 20 | C |
pT43 | chr1:72796354-72806494 | 16 | 112 | 0 | 24 | HCG |
pT1223 | chr1:59822991-59833038 | 17 | 1022 | 4 | 20 | HCG |
pT1279 | chr18:44020257-44030483 | 15 | 2015 | 1813 | 18 | HCG |
pT144 | chr13:101611291-101621562 | 8 | 1145 | 866 | 22 | HCGO |
pT145 | chr13:104133249-104143781 | 11 | 529 | 0 | 22 | HCGO |
pT325 | chr2:101586549-101596728 | 16 | 181 | 0 | 27 | HCGO |
pT424 | chr3:199260458-199270665 | 14 | 734 | 536 | 18 | HCGO |
pT458 | chr4:172846531-172856775 | 17 | 234 | 4 | 19 | HCGO |
pT1309 | chr2b:226703516-226713749 | 13 | 228 | 0 | 24 | HCGO |
pT1448 | chr11:86639999-86650182 | 9 | 182 | 0 | 30 | HCGO |
pT1404 | chr1:181059564-181069827 | 15 | 913 | 654 | 23 | O |
pT1416 | chr1:7600379-7611178 | 13 | 791 | 0 | 21 | O |
pT1431 | chr11:100399372-100409835 | 10 | 456 | 12 | 21 | O |
pT1465 | chr13:57849422-57859574 | 15 | 175 | 27 | 17 | O |
pT1535 | chr2a:44695595-44705774 | 15 | 165 | 0 | 23 | O |
pT1538 | chr2a:70854440-70864821 | 11 | 377 | 0 | 23 | O |
pT1554 | chr2b:66983758-66993962 | 17 | 174 | 20 | 21 | O |
pT1709 | chr10:72142313-72152683 | 13 | 379 | 0 | 21 | Rh |
pT1712 | chr11:100852416-100862528 | 20 | 105 | 0 | 34 | Rh |
pT1743 | chr13:4175512-4185626 | 13 | 98 | 0 | 19 | Rh |
pT1785 | chr17:40754900-40765052 | 15 | 1390 | 1244 | 34 | Rh |
pT1790 | chr17:68109266-68119556 | 14 | 294 | 0 | 39 | Rh |
pT1798 | chr18:71236237-71246385 | 7 | 252 | 118 | 19 | Rh |
pT1834 | chr3:159608718-159618930 | 17 | 457 | 257 | 14 | Rh |
pT1846 | chr3:75648970-75659040 | 14 | 61 | 8 | 16 | Rh |
pT1855 | chr4:153605855-153616110 | 17 | 252 | 0 | 21 | Rh |
pT1896 | chr6:3989032-3999144 | 15 | 97 | 0 | 36 | Rh |
pT1796 | chr18:36523812-36534192 | 9 | 665 | 294 | 17 | HCGORh |