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Table 2 Distribution of Sadhu5 subfamily members in natural strains.

From: The structure, organization and radiation of Sadhu non-long terminal repeat retroelements in Arabidopsis species

Accession number Stock number Sadhu5-1 Sadhu5-1d1 Sadhu5-1d2 Sadhu5-2
   Int 5' 3' Int 5' 3' Int 5' 3' Int 5' 3'
Br-0 CS22628 ES    ES    X X X X X X
Bur-0 CS22656     X X X X X X X X X
C24 CS22620     ES    X X X X X X
Col Lehle WT-2 X X X X X X X X X X X X
Ct-1 CS22639 ES    ES    X X X X X X
Cvi Lehle WT-18 X X* X* X X* X* X X X X X X
Cvi-0 CS22614     X X X X X X X X X
Fei-0 CS22645     ES    X X X X X X
Hi-0 CS6736 X   X ES    X X X X X  
Kn-0 CS6762 X Short X ES    X X X X X X
Kondara CS22651 X Long X        X X X
Kz-1 CS22606 X X* X*     X* X X X X X
Ler Lehle WT-4 X    ES    X X X X X*  
N13 CS22491 X X* X ES    X X X X X X
Po-0 CS6839 X X* X* ES    X X X X X X
Pro-0 CS22649 X X* X     X* X X X X X
Pu2-7 CS22592 X X* X ES    X X X X X X
Ra-0 CS22632 X X X     X X X X X X
Tamm-27 CS22605 X X X ES       X X X
Ts-1 CS22647     ES    X X X X X X
Tsu-1 CS22641 X X X ES    X X X X X X
Van-0 CS22627 X X X     X X X X X X
Wei-0 CS22622 X X X ES    X* X X X X X
Ws-2 CS22659 X Long X     X X X X X X
  1. Empty cells signify no PCR product amplified with the corresponding primers.
  2. 3' = PCR product with one primer located in the 3' flank and the other in the element; 5' = PCR product with one primer located in the 5' flank and the other in the element; ES = negative for int PCR, but empty site amplified with 5' and 3' flanking primers; int = internal PCR product, both primers located within the element; PCR = polymerase chain reaction; X* = PCR product with more distal but not with more proximal primers.