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Table 2 Distribution of Sadhu5 subfamily members in natural strains.

From: The structure, organization and radiation of Sadhu non-long terminal repeat retroelements in Arabidopsis species

Accession number

Stock number

Sadhu5-1

Sadhu5-1d1

Sadhu5-1d2

Sadhu5-2

  

Int

5'

3'

Int

5'

3'

Int

5'

3'

Int

5'

3'

Br-0

CS22628

ES

  

ES

  

X

X

X

X

X

X

Bur-0

CS22656

   

X

X

X

X

X

X

X

X

X

C24

CS22620

   

ES

  

X

X

X

X

X

X

Col

Lehle WT-2

X

X

X

X

X

X

X

X

X

X

X

X

Ct-1

CS22639

ES

  

ES

  

X

X

X

X

X

X

Cvi

Lehle WT-18

X

X*

X*

X

X*

X*

X

X

X

X

X

X

Cvi-0

CS22614

   

X

X

X

X

X

X

X

X

X

Fei-0

CS22645

   

ES

  

X

X

X

X

X

X

Hi-0

CS6736

X

 

X

ES

  

X

X

X

X

X

 

Kn-0

CS6762

X

Short

X

ES

  

X

X

X

X

X

X

Kondara

CS22651

X

Long

X

      

X

X

X

Kz-1

CS22606

X

X*

X*

   

X*

X

X

X

X

X

Ler

Lehle WT-4

X

  

ES

  

X

X

X

X

X*

 

N13

CS22491

X

X*

X

ES

  

X

X

X

X

X

X

Po-0

CS6839

X

X*

X*

ES

  

X

X

X

X

X

X

Pro-0

CS22649

X

X*

X

   

X*

X

X

X

X

X

Pu2-7

CS22592

X

X*

X

ES

  

X

X

X

X

X

X

Ra-0

CS22632

X

X

X

   

X

X

X

X

X

X

Tamm-27

CS22605

X

X

X

ES

     

X

X

X

Ts-1

CS22647

   

ES

  

X

X

X

X

X

X

Tsu-1

CS22641

X

X

X

ES

  

X

X

X

X

X

X

Van-0

CS22627

X

X

X

   

X

X

X

X

X

X

Wei-0

CS22622

X

X

X

ES

  

X*

X

X

X

X

X

Ws-2

CS22659

X

Long

X

   

X

X

X

X

X

X

  1. Empty cells signify no PCR product amplified with the corresponding primers.
  2. 3' = PCR product with one primer located in the 3' flank and the other in the element; 5' = PCR product with one primer located in the 5' flank and the other in the element; ES = negative for int PCR, but empty site amplified with 5' and 3' flanking primers; int = internal PCR product, both primers located within the element; PCR = polymerase chain reaction; X* = PCR product with more distal but not with more proximal primers.
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