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Fig. 3 | Mobile DNA

Fig. 3

From: Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

Fig. 3

Results of Look4LTRs-SS, Look4LTRs-CS, LTRharvest, and LtrDetector on the testing genomes for cross-species evaluation. These genomes consist of five species from the rice (Oryza) family: (i) Oryza sativa japonica, (ii) Oryza glaberrima, (iii) Oryza sativa indica, (iv) Oryza longistaminata, and (v) Oryza rufipogon. Look4LTRs-SS is Look4LTRs when applied to each species separately. Look4LTRs-CS is Look4LTRs when each genome is provided at once for training, thereby allow for cross-species examination. The recall (a), precision (b), and F1 scores (c) are shown as percentages

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ISSN: 1759-8753