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Fig. 3 | Mobile DNA

Fig. 3

From: Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations

Fig. 3

Evolutionary history of the crapaud LTR subfamilies (A) Maximum likelihood phylogeny of crapaud terminal repeats, arbitrarily rooted in the branch leading up to the LTR3 clade. Outer track: Species; middle track: Solo/fragment (grey), full (black), active (red); Inner track: GC-content (%), scaled between lowest (18%) and highest (58%) of the crapaud LTRs. Colours in the phylogeny correspond to the LTR subfamilies, and large clusters of a subfamily are annotated with the name of the subfamily. Branches with UFBoot values above 95 and SH-aLRT support above 80 are shown with blue circles. B Violin plot showing distribution of GC content in full copies and in solo/fragment copies. (C) Distribution of GC-content in the different subfamilies. Unclassified copies are labeled as NA.

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Mobile DNA

ISSN: 1759-8753