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Fig. 2 | Mobile DNA

Fig. 2

From: Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations

Fig. 2

Structure and similarity clustering of crapaud LTR copies. A A diagram of the crapaud LTR-retrotransposon depicting the two ORFs, one coding for a GAG protein and the other for the four domains: Reverse Transcriptase (RT), RNAse (RN), Integrase (IN), and a Chromodomain (CD). The inset shows the LTRs with subfamilies illustrated in different colors. B Sequence similarity network of crapaud terminal repeats. Sequences (nodes) with > 80% percent identity over > 80% of sequence coverage are connected together with edges. Colors and community numbers are determined by an unweighted greedy modularity community algorithm [46, 47]

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Mobile DNA

ISSN: 1759-8753