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Fig. 7 | Mobile DNA

Fig. 7

From: Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants

Fig. 7

The frequency of non-de novo TE transcription differs by TE superfamily. a, b Expressed TE loci in (a) Vv_Mock_12h and (b) Vv_Yeast_12h were grouped by the mapped start site of ONT reads in relation to the annotated TE boundaries. c, d TE loci without de novo transcription in (c) Vv_Mock_12h and (d) Vv_Yeast_12h were categorised by the mapped start site of ONT reads in relation to the closest gene. “All_within”, all mapped ONT reads initiated within TE loci (i.e. de novo transcription); “All_upstream”, all mapped ONT reads initiated from the upstream of TE loci (i.e. non-de novo transcription); Mix, a mixture of mapped ONT reads representing de novo and non-de novo transcription

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Mobile DNA

ISSN: 1759-8753