Family | Length (bp) | LTR Size | Copy Number (FLE/Solo LTR/ Truncated) | No. of Identical Paralogous Copies | Number of Sequence Reads | Intra-element LTR Identity | LTR Nucleotide Diversity ( π - Total/FLE/Solo) | ||
---|---|---|---|---|---|---|---|---|---|
Sroscv1 | 5290 | 243 | 16 (8/5/3) | 10 | 457 | 100 | 0.022 | 0.006 | 0.048 |
Sroscv2 | 4813 | 190 | 7 (4/0/3) | 2 | 243a | 100 | 0.122 | 0.122 | – |
Sroscv3 | 5165 | 394 | 21 (10/10/1) | 12 | 1288 | 99.2–100 | 0.019 | 0.006 | 0.030 |
Sroscv4 | 5965 | 580 | 15 (12/1/2) | 2 | 92 | 99.6 | 0.039 | 0.039 | – |
Sroscv5 | 6071 | 408 | 9 (6/2/1) | 2 | 1591a | 99.5–100 | 0.026 | 0.025 | – |
Srosgyp1 | 5460 | 373 | 9 (6/2/1) | 4 | 197a | 100 | 0.017 | 0.003 | – |
Srosgyp2 | 5169 | 385 | 6 (6/0/0) | 4 | 856 | 100 | 0.000 | 0.000 | – |
Srospv1 | 4943 | 387 | 14 (11/0/3) | 2 | 327 | 99.7–100 | 0.016 | 0.016 | – |
Srospv2 | 5452 | 554 | 71 (41/4/26) | 17 | 4211 | 99.6–100 | 0.044 | 0.041 | 0.077 |
Srospv3 | 5680 | 445 | 121 (59/14/48) | 18 | 5182 | 94.2–100 | 0.083 | 0.084 | 0.079 |
Srospv4 | 5148 | 359 | 4 (1/3/0) | 2 | 48 | 100 | 0.001 | – | 0.002 |
Srospv5 | 5088 | 362 | 3 (2/0/1) | 2 | 1082 | 100 | 0.000 | – | – |
Srospv6 | 11,222 | 168 | 1 (1/0/0) | 0 | n/ab | 100 | – | – | – |