From: C-GATE - catalogue of genes affected by transposable elements
Species * | Type * | Family | Subfamily | Regulatory effect * | Comments * | Gene * | Gene regulatory networks | Environment response? | Date of publication * | Reference (1) * | Reference (2) |
---|---|---|---|---|---|---|---|---|---|---|---|
Latin name | LTR, LINE, SINE, DNA | TE family | TE sub-family | How does the TE impact the gene? | A clear summary of the publication and/or details on the exaptation event. | Gene with the TE exaptation | Is the TE or gene part of a regulatory network? | Is the exaptation a response to environment changes? | Â | Reference with a link to the journal | Second reference if necessary |
Homo sapiens | LTR | ERV-1 | HERV-9 | Alternative promoter | 12% of NAIP total expression in testis is due to a LTR9. | NAIP | Â | Â | 2007 | Romanish et al. (2007) PloS Genetics [11] | Â |
Homo sapiens | LTR | ERV-3 | Mer74C | Primary promoter | Bioinformatic analysis of human and mouse RefSeq UTRs. CA1 is transcribed through two promoters one of which is a LTR copy, present in both human and mouse that confers erythroid specific expression in both species. Chimeras were confirmed through bibliography or RT PCR. Coordinates are from hg18. | CA1 | Â | Â | 2003 | Van de Lagemaat et al. (2003) Trends Genet [18] | Piriyapongsa et al. (2007) BMC Genomics [19] |