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Fig. 4 | Mobile DNA

Fig. 4

From: CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes

Fig. 4

Caulimovirid endogenous viral element diversity in Vitis vinifera. Phylogenetic tree of reverse transcriptase domains built from the Newick file obtained from CAULIFINDER Branch B applied on the V. vinifera PN40024 genome. All caulimovirid, Gypsy and retroviral reference sequences contain the tag ‘REF” in their label. Branches are colored as follows: Retroviridae (brown), Gypsy elements (blue), Caulimoviridae (black) and Branch B representative sequences (red). Several clades have been collapsed for ease of visualization. The reference RT from Vitis endovirus is indicated as “Unclassified Vvin”. Bootstrap values above 70% are highlighted using purple disks in the branch nodes

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ISSN: 1759-8753