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Fig. 2 | Mobile DNA

Fig. 2

From: Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9

Fig. 2

Analyses of the expression profiles of KRAB-Zfp clusters in various mouse cell lines and tissues. The heatmaps of the combined RNA-Seq data for the indicated cell lines (the detailed sample information is indicated in the table) and tissues are shown on the top. A The KRAB-Zfps highly expressed in mESC were selected (transcripts per million base pairs, TPM > = 25) and compared with the other cell types for their expression as indicated. B The KRAB-Zfps highly expressed in the forebrain were selected (TPM > = 4) and compared with the other indicated tissue types. For the main clusters highly expressed in mESC or in the forebrain, the ratios of the highly expressed KRAB-Zfp genes to the total number of KRAB-Zfp genes present in each cluster were calculated and shown in the tables at the bottom

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