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Fig. 2 | Mobile DNA

Fig. 2

From: Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants

Fig. 2

Identification of TE expression candidates in V. vinifera embryogenic callus and A. thaliana seedlings. a, c Bar charts demonstrating the abundance of TE expression candidate loci identified in different experimental conditions or genotypes of the V. vinifera (a) and A. thaliana (c) systems, with pie charts showing the proportion of trackable/un-trackable loci of TE expression candidates. b, d Venn diagrams showing different sets of TE expression candidates in the V. vinifera (b) and A. thaliana (d) systems. e, f Histograms demonstrating the length integrity of all annotated TE loci and TE expression candidates, and pie charts showing the proportion of full-length TE loci among all annotated TE loci and TE expression candidates, in the V. vinifera (e) and A. thaliana (f) systems. Trackable elements refer to those loci that has sufficient sequence divergence to allow reads to be unambiguously mapped to a specific genomic locus. Un-trackable elements refer to loci that have reads that multimap to many loci due to lack of any sequence divergence at these loci, the assumption being these represent recent insertions that have not yet accumulated sequence variation

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Mobile DNA

ISSN: 1759-8753