Table 6 Number of individual TEs annotated by RepeatMasker using different reference libraries
From: Software evaluation for de novo detection of transposons
Reference library | Zebrafish chromosome 1 | Fruit fly genome | Human chromosome 21 |
|---|---|---|---|
RepeatScout | 143,463 | 55,799 | 46,628 |
RepeatModeler | 86,813 | 30,754 | 49,621 |
REPET | 71,891 | 38,154 | 30,838 |
Original annotation | 107,997 | 38,282 | 53,540 |