Table 4 General annotation of models built by analyzed software using RepeatMasker and cognate libraries. In the “Novel” column we list the number of models that didn’t produce any individual matches during RepeatMasker run
From: Software evaluation for de novo detection of transposons
Software | Zebrafish chrom. 1 | Fruit fly genome | Human chrom. 21 | ||||||
|---|---|---|---|---|---|---|---|---|---|
TEs | SSR/Sat/rRNA | Novel | TEs | SSR/Sat/rRNA | Novel | TEs | SSR/Sat/rRNA | Novel | |
RepeatScout | 2343 | 152 | 424 | 1558 | 89 | 946 | 397 | 29 | 38 |
RepeatModeler | 1670 | 30 | 79 | 582 | 30 | 74 | 411 | 14 | 3 |
REPET | 331 | 5 | 6 | 510 | 42 | 5 | 31 | 32 | 2 |