Table 3 Number of models generated by three software in real sequence analysis and number of TE-families annotated in publicly available data on the same sequences
From: Software evaluation for de novo detection of transposons
Software | Zebrafish chromosome 1 | Fruit fly genome | Human chromosome 21 |
|---|---|---|---|
RepeatScout | 2919 | 2593 | 464 |
RepeatModeler | 1779 | 686 | 428 |
REPET | 342 | 557 | 65 |
Public annotation | 875 | 219 | 979 |