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Table 2 Table of greatest TE density values by TE type for the BRCA2 gene in a 1 KB window upstream and downstream. SINE elements occupy 40% of the 1000bp window upstream, examining the Superfamily section reveals that it can further be broken down into MIR and Alu elements with a 10% and 30% share, respectively. Intragenically, LINE and SINE elements contribute to the greatest share of TE Density

From: TE Density: a tool to investigate the biology of transposable elements

Top 5 TE Orders      
Upstream:      
Identity No TE No TE No TE SINE Total_TE_Density
Density 0 0 0 0.401 0.401
Intragenic:      
Identity LTR TIR SINE LINE Total_TE_Density
Value 0.032 0.073 0.194 0.226 0.524
Downstream:      
Identity No TE No TE No TE No TE No TE
Value 0 0 0 0 0
Top 5 TE Superfamilies      
Upstream:      
Identity No TE No TE MIR Alu Total_TE_Density
Density 0 0 0.1 0.301 0.401
Intragenic:      
Identity TcMar-Tigger L2 L1 Alu Total_TE_Density
Value 0.042 0.091 0.132 0.171 0.524
Downstream:      
Identity No TE No TE No TE No TE No TE
Value 0 0 0 0 0