Table 2 Table of greatest TE density values by TE type for the BRCA2 gene in a 1 KB window upstream and downstream. SINE elements occupy ∼40% of the 1000bp window upstream, examining the Superfamily section reveals that it can further be broken down into MIR and Alu elements with a ∼10% and ∼30% share, respectively. Intragenically, LINE and SINE elements contribute to the greatest share of TE Density
From: TE Density: a tool to investigate the biology of transposable elements
Top 5 TE Orders | |||||
Upstream: | |||||
Identity | No TE | No TE | No TE | SINE | Total_TE_Density |
Density | 0 | 0 | 0 | 0.401 | 0.401 |
Intragenic: | |||||
Identity | LTR | TIR | SINE | LINE | Total_TE_Density |
Value | 0.032 | 0.073 | 0.194 | 0.226 | 0.524 |
Downstream: | |||||
Identity | No TE | No TE | No TE | No TE | No TE |
Value | 0 | 0 | 0 | 0 | 0 |
Top 5 TE Superfamilies | |||||
Upstream: | |||||
Identity | No TE | No TE | MIR | Alu | Total_TE_Density |
Density | 0 | 0 | 0.1 | 0.301 | 0.401 |
Intragenic: | |||||
Identity | TcMar-Tigger | L2 | L1 | Alu | Total_TE_Density |
Value | 0.042 | 0.091 | 0.132 | 0.171 | 0.524 |
Downstream: | |||||
Identity | No TE | No TE | No TE | No TE | No TE |
Value | 0 | 0 | 0 | 0 | 0 |