Fig. 2
From: SINE jumping contributes to large-scale polymorphisms in the pig genomes
SINE RIP annotation and verification protocol. (A) Main steps and methods of SINE RIP annotation. (B) Representative electrophoresis results of PCR verification of SINE RIPs. Pooled DNA samples from each breed (the order of the breeds in the gel: Bama, Landrace, Large White, Duroc, Erhualian, Meishan, Sujiang, and Wuzhishan) were used for PCR amplification. (C) Results of PCR verification for rare SINE deletion and insertion alleles, (primers listed in Additional file 2). The X-axis represents the number of genomes presenting a certain allele (deletion or insertion relative to the reference genome), The Y-axis represents the percentage positive rate of SINE RIPs confirmed by PCR