Upregulation of selected HERVW loci in multiple sclerosis

Table 3 HERVW copies differentially expressed in CIS patients

HERVW Copy	Repeatmasker name	Reads in CIS	Reads in Controls	Fold increase	P value
chr 3-1	3q11.2	2221	124	14,76	0,0040
chr 4-3	4q31.1	92	6	12,64	0,0333
chr 5-1	5p12	3999	562	5,86	0,27
chr 9-1	9q22.31	5678	614	9,2	0,12
chr 9-2	9q31.3	81	1	> 20	0,0333
chr12-4	12q23.3	18962	20812	-1,33	0,0015
chr19-1	19p12	192	1	> 20	0,0015

The table lists several HERVW copies, using references from Tables S2-S3. Names used in RepeatMasker are also indicated. The sum of mapped reads in samples from five CIS patients or five controls is listed, as well as the resulting fold change in CIS versus control. The P value for the difference between NDI and CIS samples was adjusted for multiple testing (FDR <0.05)

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