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Table 1 Differential expression analysis of TEs families and genes in three cell types. Number of significant changes (p.adjusted < 0.05) between the donors and IPF patients in the WL, AT2 and AM are shown

From: The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis

  WL AT2 AM  
TE Family UP/DOWN UP/DOWN UP/DOWN  
SINE 0/0 1/1 1/0  
LINE 0/4 17/2 0/1  
LTR 11/0 40/17 6/5  
Other 3/0 14/2 4/0  
Genes 654/516 2477/1654 566/467  
  1. The TE changes are shown at the family level whereas each number represents number of TEs subfamily changes. WL whole lung, AT2 alveolar type II cell, AM alveolar macrophage