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Table 1 Differential expression analysis of TEs families and genes in three cell types. Number of significant changes (p.adjusted < 0.05) between the donors and IPF patients in the WL, AT2 and AM are shown

From: The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis

 

WL

AT2

AM

 

TE Family

UP/DOWN

UP/DOWN

UP/DOWN

 

SINE

0/0

1/1

1/0

 

LINE

0/4

17/2

0/1

 

LTR

11/0

40/17

6/5

 

Other

3/0

14/2

4/0

 

Genes

654/516

2477/1654

566/467

 
  1. The TE changes are shown at the family level whereas each number represents number of TEs subfamily changes. WL whole lung, AT2 alveolar type II cell, AM alveolar macrophage