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Table 3 Subfamily counts and rates of discordant annotation based on homologous TEs in humans and chimps

From: Transposable element subfamily annotation has a reproducibility problem

Family

# homologous pairs

% discordant

Alu

1093387

14.95%

L1

1050856

17.60%

  1. RepeatMasker annotions of the hg38 human genome and panTro4 chimp genomes were paired using the UCSC liftover tool. Discordant annotation was identified as that in which lifted-over annotations differed at the subfamily level