Cell line | JVM2 | G519 | REC1 | ||||
---|---|---|---|---|---|---|---|
Sequencing method | Ion Torrent (short-read) | MinION (long-read) | Ion Torrent (short-read) | ||||
Enrichment | No | Yes Growth 1 | Yes Growth 2 | Yes Growth 3 | Yes | Yes | Yes |
Total reads after QC | 3,255,142 | 2,749,743 | 2,672,868 | 3,508,762 | 218,872 | 2,839,730 | 3,073,933 |
Total reads assigned to HML-2 (%) | 113b (0.003%) | 155,700 (5.6%) | 232,687 (8.7%) | 101,495 (2.9%) | 14,147 (6.9%) | 113,807 (4.0%) | 28,014 (0.91%) |
Percentage reads from Env-encoding provirusesc | N/A | 5.3% | 15.9% | 12.8% | 20.8% | 17.2% | 2.3% |