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Fig. 3 | Mobile DNA

Fig. 3

From: Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines

Fig. 3

Relative expression of HML-2 proviruses in our study. a All experiments with default mapping. b Default mapping in JVM2 compared to counting only unique mappings and the results of a search for unique SNPs (data in Table 3; mean number of SNP hits calculated). Colours match those in Fig. 4. Env-encoding proviruses listed in same order in each bar. Provirus age and full-length ORFs indicated [20] (provirus 11q22.1 has a premature stop codon near its Env C-terminus). Genomic coordinates in Table 1 or as follows: 1p31.1 = chr1:75842771–9143; 1q21.3 = chr1:150605284–8361; 1q23.3 = chr1:160660575–9806; 1q22 = chr1:155596457–605636; 1q32.2 = chr1:207808457–12636; 3q12.3 = chr3:101410737–9859; 3q21.2 = chr3:125609302–18416; 5q33.3 = chr5:156084717–93896; 7q22.2 = chr7:104388369–93266; 11q12.3 = chr11:62135963–50563; 19p12a = chr19:20387400–97512; 19p12c = chr19:22757824–64561; 22q11.21 = chr22:18926187–35307; 22q11.23 = chr22:23879930–88810

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Mobile DNA

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