Table 4 Candidate tumor-specific L1HS insertions
From: SeqURE – a new copy-capture based method for sequencing of unknown Retroposition events
Sample | Chromosome | Position | UMI count in 3′ flank library | PCR validation |
|---|---|---|---|---|
CCC8 | 8 | 137,421,701 | 3 | Nob |
X | 144,010,198a | 4 | Nob | |
CCC9 | 5 | 28,280,060 | 13 | Yes |
8 | 16,154,249 | 3 | Nob | |
ССС10 | 20 | 53,163,810 | 2 | No |
5 | 151,055,147 | 2 | No | |
8 | 128,834,433 | 2 | No | |
CCC11 | 3 | 138,985,467 | 7 | Yes |
3 | 155,181,290 | 16 | Yes | |
CCC13 | X | 38,440,949 | 13 | Yes |