Isolate | ISMhom1a | MhoV1b | tet(M) transposonc | ICEHo-Id | ICEHo-IIe |
|---|
FBG | 5 | 0 | 0 | 3 | 0 |
8958 | 0 | 0 | 0 | 0 | 0 |
2539 | 0 | 1 | 1 | 0 | 0 |
SP10291 | 1 | 0 | 0 | 1 | 1 |
A136 | 0 | 1 | 0 | 0 | 0 |
SP2565 | 0 | 1 | 1 | 0 | 0 |
475 | 0 | 1 | 1 | 0 | 0 |
SS10 | 0 | 1 | 0 | 0 | 0 |
SS25 | 0 | 0 | 0 | 0 | 0 |
VO31120 | 0 | 0 | 0 | 0 | 0 |
SP3615 | 0 | 0 | 1 | 0 | 1 |
TO0613 | 0 | 1 | 0 | 2 | 0 |
PL5 | 0 | 0 | 1 | 2 | 0 |
18847 | 0 | 0 | 0 | 1 | 0 |
21127 | 0 | 0 | 1 | 3 | 0 |
7388 | 0 | 1 | 1 | 0 | 0 |
727 J | 0 | 0 | 0 | 0 | 1 |
7447VA | 0 | 1 | 0 | 0 | 1 |
2740 | 0 | 1 | 0 | 0 | 2 |
16753 | 0 | 1 | 1 | 0 | 2 |
942 J | 0 | 1 | 0 | 1 | 1 |
10936 | 0 | 0 | 1 | 1 | 1 |
12256 | 0 | 0 | 0 | 1 | 2 |
14352 | 0 | 0 | 0 | 1 | 1 |
19791 | 0 | 1 | 1 | 1 | 2 |
- MGEs were detected using pairwise sequence alignments between the assembly and MGE query sequences a ISMhom-1, query sequence acc.-no. dq973625, detection threshold: > 80% identity; b MHoV-1 prophage, query sequences CP009652:581744–584,733 (covering repB) and CP009652:596991–598,991 (covering exiS), detection threshold: > 80% identity for both query sequences; c tet(M), query sequence CP011538: 573817–599,077 (truncated tet(M) transposon, query sequence CP011538:577017–584,024) (derived from SPROTT), detection threshold: > 80% identity;; d ICEHo-I, query sequences: 14 MICE core genes of FBG, detection threshold: > 80% identity for > 80% of query sequences in a genomic region ≤35 kb; e ICEHo-II, query sequences: 5 MICE core genes of SP3615, detection threshold: > 80% identity for > 80% of query sequences in a genomic region ≤20 kb
