Table 1 List of IS982 elements from the ISFinder database; a original host in which the element was found. b Bacterial/archaeal group to which belongs the original host of the IS982 element according to LifeMap [26] and the NCBI taxonomy. c length of the IS982 element including transposase CDS, left and right inverted repeats. d length of the IS982 TnpA protein and coordinates of its CDS. e length of identical nt in the left and right IR over the total length. f Direct repeats in the element’s original host/species. * = Disrupted transposase coding gene
Name | Origina | Gram (+/−) or Archaea | Bacterial and Archeal host Group b | IS Length (bp)c | TnpA Length (aa)d | IR (bp)e | DR (bp)f |
|---|---|---|---|---|---|---|---|
IS1187 | Bacteroides fragilis | – | FCB Group | 1028 | 326 (34–1014) | 21/22 | 7 |
IS1592 | Pasteurella trehalosi | – | Gamma-proteobacteria | 1027 | 294 (100–984) | 18/18 | 2 |
IS1599 | Moraxella sp. | – | Gamma-proteobacteria | 1026 | 293 (102–983) | 18/18 | 0 |
IS19 | Lactococcus lactis | + | Firmicutes | 1038 | 301 (111–1016) | 21/21 | 9 |
IS195 | Porphyromonas gingivalis | – | FCB Group | 1070 | 300 (176–1078) | 12/12 | 8 |
IS233A | Bacillus thuringiensis | + | Firmicutes | 1028 | 302 (101–1009) | 25/25 | 8 |
IS982 | Lactococcus lactis | + | Firmicutes | 999 | 296 (91–981) | 19/20 | 8 |
IS982B | Lactococcus lactis | + | Firmicutes | 999 | 296 (91–981) | 19/20 | 8 |
IS982C | Lactococcus lactis | + | Firmicutes | 999 | 296 (91–981) | 19/20 | 0 |
ISAba4 | Acinetobacter baumannii | – | Gamma-proteobacteria | 975 | 292 (90–968) | 18/22 | 0 |
ISAba47 | Acinetobacter baumannii | – | Gamma-proteobacteria | 972 | 279 (83–922) | 17/20 | 7 |
ISAba6 | Acinetobacter baumannii | – | Gamma-proteobacteria | 1003 | 301 (84–988) | 12/12 | 6 |
ISAba825 | Acinetobacter baumannii | – | Gamma-proteobacteria | 975 | 291 (85–960) | 17/17 | 7 |
ISAba9 | Acinetobacter baumannii | – | Gamma-proteobacteria | 974 | 293 (84–965) | 17/17 | 8 |
ISAcsp2 | Acinetobacter sp. | – | Gamma-proteobacteria | 972 | 289 (91–960) | 11/17 | 9 |
ISAlw19 | Acinetobacter lwoffii | – | Gamma-proteobacteria | 980 | 287 (95–958) | 13/13 | 8 |
ISAlw20 | Acinetobacter lwoffii | – | Gamma-proteobacteria | 979 | 287 (95–958) | 12/12 | 6 |
ISBs1 | Bacillus stearothermophilus | + | Firmicutes | 996 | 290 (102–975) | 18/21 | 0 |
ISCaa5 | Candidatus Amoebophilus | – | FCB Group | 920 | 274 (86–910) | 21/25 | 6 |
ISCca1 | Candidatus Cardinium | – | FCB Group | 1000 | 291 (105–980) | 21/22 | 4 |
ISCca4 | Candidatus Cardinium | – | FCB Group | 999 | 291 (104–979) | 18/19 | 6 |
ISCef2 | Corynebacterium efficiens | + | Actinobacteria | 1017 | 301 (84–989) | 24/26 | 0 |
ISCef3 | Corynebacterium efficiens | + | Actinobacteria | 989 | 301 (68–973) | 11/11 | 0 |
ISClce1 | Clostridium cellulovorans | + | Firmicutes | 1157 | 313 (115–1056) | 11/13 | 0 |
ISCth1 | Clostridium thermocellum | + | Firmicutes | 1151 | 315 (109–1056) | 22/29 | 7 |
ISDds4 | Deinococcus deserti | + | Deinococcus | 845 | 257 (65–838) | 18/23 | 3 |
ISDds5 | Deinococcus deserti | + | Deinococcus | 845 | 257 (65–838) | 19/24 | 6 |
ISDge8 | Deinococcus geothermalis | + | Deinococcus | 907 | 271 (55–870) | 19/19 | 5 |
ISEfm1 | Enterococcus faecium | + | Firmicutes | 1041 | 302 (111–1020) | 22/22 | 7 |
ISFba2 | Flavobacteria bacterium | – | FCB Group | 998 | 277 (150–982) | 18/18 | 0 |
ISFtu4 | Francisella tularensis | – | Gamma-proteobacteria | 963 | 284 (92–945) | 11/11 | 7 |
ISGsp1 | Geobacillus sp. | + | Firmicutes | 1004 | 292 (105–983) | 14/14 | 9 |
ISGth1 | Geobacillus thermodenitrificans | + | Firmicutes | 1001 | 292 (102–980) | 14/14 | 9 |
ISLbp3 | Leptospira borgpetersenii | – | Spirochaetes | 1115 | 305 (185–1102) | 25/32 | 0 |
ISLgar2 | Lactococcus garvieae | + | Firmicutes | 998 | 296 (90–980) | 20/20 | 8 |
ISLgar3 | Lactococcus garvieae | + | Firmicutes | 994 | 297 (99–992) | 16/17 | 6 |
ISLh1 | Lactobacillus helveticus | + | Firmicutes | 962 | 271 (137–952) | 32/35 | 7 |
ISLhe1 | Lactobacillus helveticus | + | Firmicutes | 965 | 240 (78–800) | 27/28 | 8 |
ISLhe5 | Lactobacillus helveticus | + | Firmicutes | 965 | 285 (98–955) | 27/28 | 0 |
ISLhe7 | Lactobacillus helveticus | + | Firmicutes | 965 | 285 (98–955) | 27/28 | 8 |
ISLla2 | Lactococcus lactis | + | Firmicutes | 998 | 296 (90–980) | 21/27 | 0 |
ISLll1 | Lactococcus lactis | + | Firmicutes | 999 | 296 (91–981) | 18/20 | 4 |
ISLpl4 | Lactobacillus plantarum | + | Firmicutes | 985 | 292 (97–975) | 29/35 | 8 |
ISNeu1 | Nitrosomonas europaea | – | Beta-proteobacteria | 996 | 292 (97–972) | 18/18 | 8 |
ISNeu2 | Nitrosomonas europaea | – | Beta-proteobacteria | 1000 | 208 (350–973) | 21/21 | 3 |
ISNsp1 | Nostoc sp. | – | Cyanobacteria/Melainabacteria | 1028 | 297 (121–1011) | 16/17 | 6 |
ISOt4* | Orientia tsutsugamushi | – | Alpha-proteobacteria | 988 | 251 (226–980) | 15/18 | 5 |
ISPasp1 | Parachlamydia sp. | – | PVC Group | 1018 | 292 (124–999) | 17/17 | 5 |
ISPasp2 | Parachlamydia sp. | – | PVC Group | 1023 | 292 (128–1003) | 16/17 | 4 |
ISPasp3 | Parachlamydia sp.. | – | PVC Group | 952 | 275 (105–929) | 22/22 | 10 |
ISPfu3 | Pyrococcus furiosus | Archaea | Thermococci | 933 | 289 (59–930) | 15/16 | 2 |
ISPlu11 | Photorhabdus luminescens | – | Gamma-proteobacteria | 988 | 294 (91–975) | 15/17 | 2 |
ISPlu6 | Photorhabdus luminescens | – | Gamma-proteobacteria | 990 | 294 (93–977) | 15/17 | 0 |
ISPrsp2 | Parabacteroides sp. | – | FCB Group | 1021 | 324 (33–1007) | 21/22 | 7 |
ISPsa1 | Piscirickettsia salmonis | – | Gamma-proteobacteria | 1282 | 239 (282–1001) | 09/18 | 7 |
ISPsma1 | Psychrobacter maritimus | – | Gamma-proteobacteria | 983 | 294 (90–974) | 20/21 | 3 |
ISRa1 | Riemerella anatipestifer | – | FCB Group | 983 | 292 (4688–5566) | 14/16 | 0 |
ISRmsp1 | Ruminococcus sp. | + | Firmicutes | 1112 | 312 (92–1030) | 21/28 | 9 |
ISSa4 | Streptococcus agalactiae | + | Firmicutes | 962 | 287 (90–953) | 24/24 | 9 |
ISScr1 | Streptococcus criceti | + | Firmicutes | 962 | 287 (89–952) | 22/25 | 6 |
ISSde7 | Shewanella denitrificans | – | Gamma-proteobacteria | 989 | 295 (89–976) | 12/17 | 8 |
ISSmu5 | Streptococcus mutans | + | Firmicutes | 951 | 297 (49–942) | 17/18 | 0 |
ISSod20 | Shewanella oneidensis | – | Gamma-proteobacteria | 995 | 292 (104–982) | 15/20 | 9 |
ISSpy2 | Streptococcus pyogenes | + | Firmicutes | 962 | 287 (89–952) | 21/23 | 8 |
ISSsu12 | Streptococcus suis | + | Firmicutes | 962 | 302 (44–952) | 27/28 | 2 |
ISSude1 | Sulfurimonas denitrificans | – | Epsilon-proteobacteria | 916 | 279 (75–914) | 15/16 | 0 |
ISTli1 | Thermococcus litoralis | Archaea | Thermococci | 905 | 280 (58–902) | 15/16 | 2 |
ISVsa6 | Aliivibrio salmonicida | – | Gamma-proteobacteria | 1001 | 293 (95–976) | 17/17 | 6 |
ISWpi16 | Wolbachia pipientis | – | Alpha-proteobacteria | 981 | 290 (95–967) | 18/18 | 0 |
ISXne5 | Xenorhabdus nematophila | – | Gamma-proteobacteria | 980 | 294 (93–977) | 20/26 | 7 |