Table 2 Presence and association of tnp2B and CficCl-61-40 satDNA family arrays (see also Additional file 1)
Species | Genomes | tnp2B | tnp2B+ array | Contig No | tnp2B lengths | Array copy-numb | Similarity tnp2B-array |
|---|---|---|---|---|---|---|---|
C. acerifolium | B + D | yes | no | – | – | – | – |
C. album | B + C + D | yes | yes | 1990 | 579 bp | 12.0 | 89.7% |
C. bryoniifolium | A | no | no | – | – | – | – |
C. ficifolium | B | yes | no | – | – | – | – |
C. iljinii | E | no | no | – | – | – | – |
C. jenissejense | B + E | no | no | – | – | – | – |
C. karoi | B + E | no | no | – | – | – | – |
C. luteorubrum | A + C + D | yes | no | – | – | – | – |
C. novopokrovskyanum | C + D | yes | no | – | – | – | – |
C. opulifolium | B + C + F | no | no | – | – | – | – |
C. pamiricum | E | no | no | – | – | – | – |
C. sosnowskyi | A + G | no | no | – | – | – | – |
C. striatiforme | C + D | yes | yes | 541 | 134 bp | 54.2 | 89.8% |
28,391 | 371 bp | 22.2 | 94.9% | ||||
C. strictum | C + D | yes | yes | 700 | 371 bp | 27.9 | 90.0% |
10,973 | 386 bp | 17.4 | 94.9% | ||||
11,346 | 341 bp | 27.1 | 80.0% | ||||
C. suecicum | B | no | no | – | – | – | – |
C. vulvaria | H | no | no | – | – | – | – |