Table 1 Cutoffs and the number of candidate loci in YRI individuals
| Â | AluYb | L1HS | SVA | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Individual | Cutoff (TPM,UR) | All | Poly-morphic | Novel | Cutoff (TPM,UR) | All | Poly-morphic | Novel | Cutoff (TPM,UR) | All | Poly-morphic | Novel |
NA18500 | (10,10) | 2411 | 387 | 168 | (10,10) | 951 | 234 | 108 | (4,9) | 1395 | 164 | 13 |
NA18501 | (10,10) | 2453 | 416 | 188 | (10,10) | 949 | 231 | 112 | (3,10) | 1398 | 178 | 12 |
NA18502 | (10,10) | 2546 | 452 | 206 | (10,10) | 968 | 252 | 142 | (5,10) | 1393 | 172 | 14 |
NA18503 | (10,10) | 2418 | 392 | 181 | (10,10) | 950 | 237 | 126 | (4,10) | 1390 | 166 | 10 |
NA18504 | (10,10) | 2463 | 418 | 191 | (10,10) | 981 | 257 | 133 | (3,9) | 1400 | 170 | 7 |
NA18505 | (10,10) | 2494 | 427 | 183 | (10,10) | 1028 | 301 | 159 | (4,10) | 1407 | 175 | 9 |
NA18506 | (10,8) | 2347 | 362 | 139 | (10,10) | 916 | 211 | 116 | (4,6) | 1392 | 170 | 15 |
NA18507 | (10,10) | 2408 | 383 | 145 | (10,10) | 922 | 220 | 115 | (3,10) | 1404 | 174 | 11 |
NA18508 | (10,10) | 2634 | 509 | 242 | (10,10) | 998 | 276 | 156 | (5,10) | 1405 | 175 | 15 |
NA18515 | (10,10) | 2563 | 445 | 213 | (10,10) | 982 | 255 | 135 | (5,10) | 1393 | 162 | 13 |
NA18516 | (10,10) | 2554 | 448 | 208 | (10,10) | 1049 | 310 | 172 | (6,10) | 1369 | 141 | 7 |
NA18517 | (10,10) | 2566 | 464 | 224 | (10,10) | 1023 | 293 | 165 | (4,10) | 1417 | 183 | 21 |
NA18521 | (10,10) | 2572 | 470 | 218 | (10,10) | 959 | 238 | 131 | (5,10) | 1398 | 163 | 14 |
NA18522 | (10,10) | 2562 | 449 | 205 | (10,10) | 967 | 237 | 122 | (5,10) | 1402 | 171 | 14 |
NA18523 | (10,10) | 2689 | 533 | 252 | (10,10) | 1047 | 319 | 176 | (5,10) | 1427 | 193 | 23 |
NA19101 | (10,10) | 2534 | 424 | 184 | (10,10) | 1001 | 273 | 147 | (5,10) | 1378 | 154 | 5 |
NA19102 | (10,10) | 2550 | 445 | 193 | (10,10) | 1018 | 286 | 157 | (6,10) | 1381 | 149 | 4 |
NA19103 | (10,10) | 2455 | 398 | 161 | (10,10) | 1005 | 278 | 155 | (5,7) | 1372 | 149 | 8 |
NA19137 | (10,10) | 2593 | 476 | 201 | (10,10) | 995 | 268 | 144 | (6,10) | 1379 | 150 | 10 |
NA19138 | (10,10) | 2604 | 467 | 201 | (10,10) | 1040 | 299 | 156 | (7,10) | 1376 | 146 | 11 |
NA19139 | (10,10) | 2619 | 480 | 202 | (10,10) | 1021 | 285 | 152 | (7,10) | 1370 | 147 | 11 |
NA19171 | (10,10) | 2652 | 503 | 219 | (10,10) | 1085 | 333 | 188 | (6,10) | 1374 | 149 | 6 |
NA19172 | (10,10) | 2668 | 533 | 231 | (10,10) | 1100 | 350 | 194 | (7,10) | 1381 | 149 | 11 |
NA19173 | (10,10) | 2564 | 438 | 173 | (10,10) | 1035 | 292 | 160 | (7,10) | 1361 | 138 | 9 |
NA19200 | (10,10) | 2617 | 479 | 209 | (10,10) | 1029 | 293 | 163 | (6,10) | 1387 | 158 | 8 |
NA19201 | (10,10) | 2567 | 455 | 199 | (10,10) | 1004 | 275 | 151 | (7,10) | 1367 | 140 | 7 |
NA19202 | (10,10) | 2669 | 510 | 230 | (10,10) | 1098 | 358 | 204 | (6,10) | 1384 | 155 | 10 |
NA19203 | (10,10) | 2559 | 433 | 179 | (10,10) | 1051 | 307 | 165 | (6,10) | 1374 | 151 | 4 |
NA19204 | (10,10) | 2686 | 534 | 239 | (10,10) | 1160 | 408 | 254 | (7,10) | 1378 | 152 | 14 |
NA19205 | (10,10) | 2589 | 454 | 199 | (10,10) | 1024 | 290 | 158 | (6,10) | 1368 | 145 | 9 |
NA19206 | (10,10) | 2270 | 349 | 122 | (10,9) | 953 | 248 | 129 | (4,4) | 1392 | 172 | 13 |
NA19207 | (10,10) | 2516 | 422 | 184 | (10,10) | 1062 | 325 | 191 | (6,10) | 1371 | 140 | 10 |
NA19208 | (10,10) | 2491 | 410 | 169 | (10,10) | 1011 | 278 | 144 | (4,9) | 1381 | 152 | 8 |
NA19209 | (10,10) | 2544 | 432 | 195 | (10,10) | 1025 | 296 | 160 | (7,10) | 1367 | 141 | 8 |
NA19210 | (10,10) | 2615 | 473 | 198 | (10,10) | 1073 | 336 | 197 | (6,10) | 1380 | 147 | 11 |
NA19211 | (10,10) | 2485 | 412 | 176 | (10,10) | 1037 | 296 | 161 | (5,10) | 1375 | 150 | 3 |
Total | Â | 4216 | 1819 | 1079 | Â | 2250 | 1456 | 1175 | Â | 1779 | 477 | 180 |