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Fig. 3 | Mobile DNA

Fig. 3

From: Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

Fig. 3

a-b Curation required by number of L1 loci in strand-specific cytoplasmic and whole-cell RNA-Seq data from replicates 1 and 2. Depicted are pie charts of the number of L1 loci that were curated to be truly or falsely expressed in strand-separated RNA-Seq data from whole cells and cytoplasm. In black are the false loci, in grey are the true loci identified in cytoplasmic RNA samples, and in purple are the true loci identified in whole-cell RNA samples. The number of total curated L1s is denoted beneath the pie charts. c-d Curation required by number of mapped reads to L1 loci in stranded cytoplasmic and whole cell RNA-seq data from replicates 1 and 2. Depicted are pie charts of the number of sense-oriented reads mapping to L1 loci that were curated to be truly or falsely expressed in strand-separated RNA-Seq data from whole cells and cytoplasm. In black are the false reads, in grey are the true reads identified in cytoplasmic RNA samples, and in purple are the true reads identified in whole cell samples. The number of total curated reads is denoted beneath the pie charts

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