Fig. 1

Expressed L1 loci in cytoplasmic versus whole-cell RNA sequencing in 22Rv1 after manual curation. The y-axis denotes the number of uniquely mapped transcript reads as FPKM values × 10². The x-axis denotes the L1 loci identification numbers found to be expressed after manual curation. The same loci are shown in the same order for the cytoplasmic and whole-cell RNA-Seq samples. The bars in black represent averaged normalized reads in the cytoplasmic RNA-seq from the 22Rv1 samples with standard error bars and n = 2. The bars in purple represent averaged normalized reads in the whole-cell RNA-Seq 22Rv1 samples with standard error bars and an n = 2. Only the first 100 loci ordered from highest to lowest expressing in the whole cell samples are shown out the total 191 loci identified to-be-expressed in order to better fit as many data points as possible and still visualize the distinctive data. The cytoplasmic loci totaled a FPKM of about 3 overall, whie the whole-cell loci expressed at a FPKM close to 10. These numbers are only based on uniquely-mapped reads and are therefore underestimates